View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16677_low_2 (Length: 630)
Name: NF16677_low_2
Description: NF16677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16677_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 485; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 16 - 551
Target Start/End: Original strand, 7976681 - 7977216
Alignment:
| Q |
16 |
acccagttcgcgcttaaattcgagagcctgcagtgtgatagaggaattgcgaagacaaaaaaccctagacacgaatttggtgaaattcttgtaaagtcga |
115 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
7976681 |
accccgttcgcgcttaaattcgagagcctgcagtgtgatagaggaattgcgaagacataaa-ccctagacacgaatttggtgaaattcttgtaaagtcga |
7976779 |
T |
|
| Q |
116 |
aaatctgtagaatagaatctaagagtgggaagaagcttccacagattcttccatctggtagacagaacgcaagtctggcgttcaaaaag-agagaatgtg |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
7976780 |
aaatctgtagaatagaatctaagagtgggaagaagcttccagagattcttccatctggtagacagaacgcaagtttggcgttcaaaaaggagagaatgtg |
7976879 |
T |
|
| Q |
215 |
aaggataatgcattcgggtaagtcgctgagcatgtctttagtttcaatctctctgagttttgctttctttggtatctgagtatcggaatttgacattgtg |
314 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7976880 |
aaggataatgcattcgggtaagtcgctgagcgtgtctttagtttcaatctctctgagttttgctttctttggtatctgagtatcggaatttgacattgtg |
7976979 |
T |
|
| Q |
315 |
ataaaggacctaagcatgaaacagaaacaaaatgggattattttctgcaagcgaaagcgattctacggtgagttttcgaacagatcaaagcaacggaaaa |
414 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
7976980 |
ataaaggacctaagcatgaaacagaaacaaaatgggattattttctgcaagcgaaagcgattctacggtgagttttcgaacagataaaagcaacggaaaa |
7977079 |
T |
|
| Q |
415 |
aggtggaaatgaataagacataccttgcgcgaatcttgagactcaagaagtggaattgcacggtggttatagctcattgaaatcaataacaaataaagtg |
514 |
Q |
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| T |
7977080 |
aggtggaaatgaataagacataccttgcgcgaatcttgagactcaagaagtggaattgcacggtggttatagctcattgaaatcaactacaaataaagtg |
7977179 |
T |
|
| Q |
515 |
tgagtgttcaatattgtggcagtggtaagggtagtac |
551 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||| |
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| T |
7977180 |
tgagtgttcaatatggtggcagtggtaagggtagtac |
7977216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 29 - 189
Target Start/End: Complemental strand, 7895192 - 7895032
Alignment:
| Q |
29 |
ttaaattcgagagcctgcagtgtgatagaggaattgcgaagacaaaaaaccctagacacgaatttggtgaaattcttgtaaagtcgaaaatctgtagaat |
128 |
Q |
| |
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|||||||| |||||||||||| ||| |||||||||||||||| | |||||| ||||||| ||||| ||||| ||| |||||| ||||||||||||||||| |
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| T |
7895192 |
ttaaattcaagagcctgcagtttgacagaggaattgcgaagagataaaaccttagacacaaattttgtgaatttcgtgtaaaatcgaaaatctgtagaat |
7895093 |
T |
|
| Q |
129 |
agaatctaagagtgggaagaagcttccacagattcttccatctggtagacagaacgcaagt |
189 |
Q |
| |
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||||||||||| ||| ||||| ||||| ||||||||||||||| |||||| || |||||| |
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| T |
7895092 |
cgaatctaagagcgggtagaagtttccagagattcttccatctgatagacaaaatgcaagt |
7895032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 275
Target Start/End: Complemental strand, 7895018 - 7894933
Alignment:
| Q |
191 |
tggcgttcaaaaag-agagaatgtgaaggataatgcattcgggtaagtcgctgagcatgtctttagtttcaatctctctgagtttt |
275 |
Q |
| |
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|||| ||||||||| | |||||||||||||||||||||||||||| || || | ||||||||||||||| || ||||||||| |
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| T |
7895018 |
tggcattcaaaaaggaaagaatgtgaaggataatgcattcgggtaggtagcgaaatgcgtctttagtttcaatttcgctgagtttt |
7894933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 26 - 161
Target Start/End: Complemental strand, 3978305 - 3978170
Alignment:
| Q |
26 |
cgcttaaattcgagagcctgcagtgtgatagaggaattgcgaagacaaaaaaccctagacacgaatttggtgaaattcttgtaaagtcgaaaatctgtag |
125 |
Q |
| |
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|||||||| || ||||| || |||| ||||||||||| ||||||| | ||||| ||||||| ||| ||||||| ||||||||| || ||| |||| || |
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| T |
3978305 |
cgcttaaaatcaagagcttgtagtgcgatagaggaatcgcgaagaaataaaactttagacactaatctggtgaatttcttgtaagctccaaagtctgaag |
3978206 |
T |
|
| Q |
126 |
aatagaatctaagagtgggaagaagcttccacagat |
161 |
Q |
| |
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||| ||| ||||||| |||||| | ||||| |||| |
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| T |
3978205 |
aatgcaatgtaagagtaggaagacgtttccaaagat |
3978170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 29 - 128
Target Start/End: Original strand, 2996368 - 2996467
Alignment:
| Q |
29 |
ttaaattcgagagcctgcagtgtgatagaggaattgcgaagacaaaaaaccctagacacgaatttggtgaaattcttgtaaagtcgaaaatctgtagaat |
128 |
Q |
| |
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||||| ||||||| ||||| || |||||||||| || |||| | |||||| ||||||| ||||||||||| ||||||||| |||||| || ||||||| |
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| T |
2996368 |
ttaaaatcgagagtctgcaatgaaatagaggaatcgcaaagagataaaaccttagacacaaatttggtgaatttcttgtaagttcgaaagtcggtagaat |
2996467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 25 - 140
Target Start/End: Complemental strand, 20977563 - 20977448
Alignment:
| Q |
25 |
gcgcttaaattcgagagcctgcagtgtgatagaggaattgcgaagacaaaaaaccctagacacgaatttggtgaaattcttgtaaagtcgaaaatctgta |
124 |
Q |
| |
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||||||||| || ||||||| | |||||| ||||||| ||||||| | |||| | ||||||||||||||||||| |||||||| || ||| ||| || |
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| T |
20977563 |
gcgcttaaaatcaagagcctctaatgtgatggaggaatcgcgaagagataaaatcttagacacgaatttggtgaatatcttgtaagttctaaagtctcta |
20977464 |
T |
|
| Q |
125 |
gaatagaatctaagag |
140 |
Q |
| |
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|||| |||||||||| |
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| T |
20977463 |
caatataatctaagag |
20977448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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