View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16677_low_3 (Length: 591)
Name: NF16677_low_3
Description: NF16677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16677_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 186 - 576
Target Start/End: Complemental strand, 54474652 - 54474263
Alignment:
| Q |
186 |
aattatgttatacctgactcattcttggacgccttcttcctgagtgcctaacacaagcagaagcacaagctaccatacgtgtcatatcttgtttctcata |
285 |
Q |
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| T |
54474652 |
aattatgttatacctgactcattcttggacgccttcttcctgagtgcctaacacaagcagaagcacaagctaccatacgtgtcatatcttgtttctcata |
54474553 |
T |
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| Q |
286 |
attttcctctaaacgtggatccaccaatccaagatatattccatattccagggcttttgaacaaagtggtctagtctgcattttcatatacaaagtatgg |
385 |
Q |
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| T |
54474552 |
attttcctctaaacgtggatccaccaatccaagatatattccatattccagtgcttttgaacaaagtggtctagcctgcattttcataaacaaagtatgg |
54474453 |
T |
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| Q |
386 |
tacgtaattataggaatatgacattaatgataatctagtattggaaatattcataatcaaaataatgtcgaaatatgaaatgcaatatatacccaatcaa |
485 |
Q |
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| T |
54474452 |
tacgtaattataggaatatgacatt-atgataatctagtattggaaatattcataatcaaaataatgtcgaaatatgaaatgcaatatatacccaatcaa |
54474354 |
T |
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| Q |
486 |
ccaaactatcttcctcgtaatcactgccggcggtaccgactggtcgtcgtcctgttatgagctccaaaagcatgacaccatacgaaaagac |
576 |
Q |
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| T |
54474353 |
ctaaactatcttcctcgtaatcactgccggcggtaccgactggccgtcgtcctgttatgagctccaaaagcataacaccatacgagaagac |
54474263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 13 - 187
Target Start/End: Complemental strand, 54474876 - 54474702
Alignment:
| Q |
13 |
catcataatctccacttgcgctactgtacatagcactatgtccaggtttcactccatcctggtttataagcacttctagtgaagcatctccttccagtac |
112 |
Q |
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| T |
54474876 |
catcataatctccacttgcgctactgtacatagcactatgtccaggtttcactccatcctggtttataagcacttctagtgaagcatctccttccagtac |
54474777 |
T |
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| Q |
113 |
ccgtacaatctattcaattcaaatacataaatatatttcatgtttttgttagcatataatataactaaatatcaa |
187 |
Q |
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| T |
54474776 |
ccgtacaatctattcaattcaaatacataaatatatttcatgtttttgttagcatataatataactaaatatcaa |
54474702 |
T |
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