View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16677_low_4 (Length: 529)
Name: NF16677_low_4
Description: NF16677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16677_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 17 - 511
Target Start/End: Complemental strand, 2785593 - 2785100
Alignment:
| Q |
17 |
actttaaaacaagcacaccctaaacattatcttttctcaacgtgaggacgttgatttaatggctcaggcgtttatggttaattgttttcatatcaaatcc |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
2785593 |
actttaaaacaagcacaccctaaacattatcttttctcaacgtgaggacgttgatttaatgtctcaggtgtttatggttaattgttttcatatcaaatcc |
2785494 |
T |
|
| Q |
117 |
tctttatcttttgtaattccacaccnnnnnnncgttgataaaagtaaatccactcttttgtcatgtttccttcatctctttattattcgtacacatttct |
216 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2785493 |
tctttatcttttgtaattccacacctttttttggttgataaaagtaaatccactcttttgtcatgtttccttcatctctttattattcgtacacatttct |
2785394 |
T |
|
| Q |
217 |
tattagnnnnnnnnnnnnnnnnnnnnnnnncaatttagattcatgtctttgcccaatactccaatgcgcacatgtgaaatagtcttgcaccaaagtctat |
316 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2785393 |
tattagttttttacattttgtttttgttttcaatttagattcatgtctttgcccaatactccaatgcgcacatgtgaaatagtcttgcaccatagtctat |
2785294 |
T |
|
| Q |
317 |
aaacaagtttattttctagcattagattaataataatcacattatatttcatttgatctaatgatgtaatttgctgattccaatgatataaataaattta |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||| |
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| T |
2785293 |
aaacaagtttattttctagcattagattaataataatcacattatatttcatttgatctaataatgtaatttgctgatt-caatgatataaacaaattta |
2785195 |
T |
|
| Q |
417 |
tctatgatacaagatttatctcacttgacacttgtacatcataaaatgatgttatatctcatacgagatttatcccacgttatatttcatttgat |
511 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
2785194 |
tctatgatacaagatttatcccacttgacacttgtacatcataaaatgatgttatatctcataaaagatttatcccacattatatttcatttgat |
2785100 |
T |
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