View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16677_low_5 (Length: 422)
Name: NF16677_low_5
Description: NF16677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16677_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 16 - 418
Target Start/End: Complemental strand, 34858225 - 34857823
Alignment:
| Q |
16 |
gaaacaatttaaacttatcccataccttttcgatttctatccaccaaannnnnnnn-acaccgaaaacaaatgttttgagaacgcaaatagctctcaaca |
114 |
Q |
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| T |
34858225 |
gaaacaacttaaacttatcccataccttttcgatttctatccaccaaaaatttttttacaccgaaaacaaatgttttgagaacgcaaatagctctcaaca |
34858126 |
T |
|
| Q |
115 |
tatatatcttgttgcaaattaacttataaaatcttagcacttatgataagaaatctcatatgacaagcatttactaaataaacgctttattaagttgttt |
214 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34858125 |
tatatatcttgttgcaaat-aacttataaaatcttagcacttatgataagaaatctcatatgacaagcatttactaaataaacgctttattaagttgttt |
34858027 |
T |
|
| Q |
215 |
atccaaaagtgaccctagtcttaactttttcctaccaatgacacataatcaattgaaagaggccaaattccataagtgataagcaactgataacaaaaat |
314 |
Q |
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||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34858026 |
atccaaaagtgcctcttgtcttaactttttcctaccaatgacacataatcaattgaaagaggccaaattccataagtgataagcaactgataacaaaaat |
34857927 |
T |
|
| Q |
315 |
aaggaatgaagtatagtttcttaaccaacagtccagttatggctagcacagccaaagagttcttgatgtccattggtgcagacttcaaaaggatgatgtc |
414 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| || |
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| T |
34857926 |
aaggaatgaagtatagtctcttaaccaacagtccagttatggctagcacagccaaagagtccttgatgtccattggtgcagacttcaaaagtatgatttc |
34857827 |
T |
|
| Q |
415 |
catc |
418 |
Q |
| |
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|||| |
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| T |
34857826 |
catc |
34857823 |
T |
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