View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16677_low_6 (Length: 350)
Name: NF16677_low_6
Description: NF16677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16677_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 55169655 - 55169996
Alignment:
| Q |
1 |
agaattaaggaagtgacaatcgactctcattgcttctagatgtgagttggtgaggcaggttagacttatgtggctggtagtggtacctttctcattcttg |
100 |
Q |
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| T |
55169655 |
agaattaaggaagtgacaatcaaatctcattgcttctagatgtgagttggtgaggcaggttagacttatgtggctggtagtggtacctttctcattcttg |
55169754 |
T |
|
| Q |
101 |
gagcaaatcatgctacacttaaagcttttacacccttctaatgttattgtgttagatgtagtaaaaatagcacctatcatttcactatttagaaattagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55169755 |
gagcaaatcatgctacacttaaagcttttacacccttctaatgttattgtgttagatgtagtaaaaatagcacctatcatttcactatttagaaattagt |
55169854 |
T |
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| Q |
201 |
tagttagtctatttataagtttaattatcatacgtagcaggtgttcatgcttagatcttgatattttgaacaagctagacttaaactttgtaaatactaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
55169855 |
tagttagtctatttataagtttaattatcatacgtagcaggtgttcatgcttagatcttgatattttgaacaagctagacttgaactttgtaaatactaa |
55169954 |
T |
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| Q |
301 |
ctcagtctatttattcctttccctggtctagtttctgatgat |
342 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| |
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| T |
55169955 |
ctcagtctatttattcctttccctggtctagtttcagatgat |
55169996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 62
Target Start/End: Complemental strand, 27807816 - 27807783
Alignment:
| Q |
29 |
attgcttctagatgtgagttggtgaggcaggtta |
62 |
Q |
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| T |
27807816 |
attgcttctagatgtgagttggtgagacaggtta |
27807783 |
T |
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