View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16678_high_10 (Length: 540)
Name: NF16678_high_10
Description: NF16678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16678_high_10 |
 | |
|
| [»] scaffold1194 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 478; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 13 - 522
Target Start/End: Original strand, 26370324 - 26370834
Alignment:
| Q |
13 |
gagacaagagatggtgaaactgtgtgtatcaactatacaacagagtcaatttatatatactcaaggcgataaatactgattaaatataaaagacattatc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26370324 |
gagacaagagatggtgaaactgtgtgtatcaactatacaacagagtcaatttatatatactcaaggcgataaatactgattaaatataaaagacattatc |
26370423 |
T |
|
| Q |
113 |
tagcaagcgtacataatcaccagacatgatactaacatgtagacatcgataagaattgaagaaaacataagttactgaatgttgacacatgtgtcaatgt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26370424 |
tagcaagcgtacataatcaccagacatgatactaacatgtagacatcgataagaattgaagaaaacataagttactgaatgttgacacatgtgtcaatgt |
26370523 |
T |
|
| Q |
213 |
cggacatcgacactttcggacaaagattatagaagcttacagttgagagtccaagagcttgcttttcttctcgaaaaatttcagagcagtaagcctgtta |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26370524 |
cggacatcgacactttcggacaaagattatagaagcttacagttgagagtccaaaagcttgcttttcttctcgaaaaatttcagagcagtaagcctgtta |
26370623 |
T |
|
| Q |
313 |
ttagaaaaggatgtgac-nnnnnnnttaactaatatctctgatgtggaaggatgaaactttcaggtattattgtgttgattggtaccttcattggtccaa |
411 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26370624 |
ttagaaaaggatgtgacaaaaaaaattaactaatatctctgatgtggaaggatgaaactttcaggtattattgtgttgattggtaccttcattggtccaa |
26370723 |
T |
|
| Q |
412 |
gcaaaccatttaaacttccaagaaaaaaccgtgttgtaacagccatccaaaaacttgtgctaaggccaaatagtgtgttgaaaatgatactgaaataaag |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26370724 |
gcaaaccatttaaacttccaagaaaaaaccgtgttgtaacagccatccaaaaacttgtgctaaggccaaatagtgtgttgaaaatgatactgaaataaag |
26370823 |
T |
|
| Q |
512 |
taatcatcatc |
522 |
Q |
| |
|
||||||||||| |
|
|
| T |
26370824 |
taatcatcatc |
26370834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 394 - 514
Target Start/End: Original strand, 16589302 - 16589422
Alignment:
| Q |
394 |
gtaccttcattggtccaagcaaaccatttaaacttccaagaaaaaaccgtgttgtaacagccatccaaaaacttgtgctaaggccaaatagtgtgttgaa |
493 |
Q |
| |
|
||||||| | ||||||||||| |||||||||| ||| |||| ||| | || | || |||||||||||||| || |||||||| |||| ||||||||| |
|
|
| T |
16589302 |
gtaccttaactggtccaagcacgccatttaaacctccgagaagaaatctggtggcaatagccatccaaaaacccgtactaaggccgaataatgtgttgaa |
16589401 |
T |
|
| Q |
494 |
aatgatactgaaataaagtaa |
514 |
Q |
| |
|
||||| |||||||| |||||| |
|
|
| T |
16589402 |
aatgacactgaaatcaagtaa |
16589422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 394 - 512
Target Start/End: Original strand, 16529295 - 16529413
Alignment:
| Q |
394 |
gtaccttcattggtccaagcaaaccatttaaacttccaagaaaaaaccgtgttgtaacagccatccaaaaacttgtgctaaggccaaatagtgtgttgaa |
493 |
Q |
| |
|
||||||| | ||| ||||||| |||||||||||||| |||| ||| | || ||| |||||||||| ||| || ||||||||||||| ||||||||| |
|
|
| T |
16529295 |
gtaccttaactggcccaagcacgccatttaaacttccgagaagaaatctcgtgataatagccatccaataacccgtactaaggccaaataatgtgttgaa |
16529394 |
T |
|
| Q |
494 |
aatgatactgaaataaagt |
512 |
Q |
| |
|
||||| |||||||| |||| |
|
|
| T |
16529395 |
aatgacactgaaatcaagt |
16529413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 448 - 507
Target Start/End: Original strand, 16520834 - 16520893
Alignment:
| Q |
448 |
taacagccatccaaaaacttgtgctaaggccaaatagtgtgttgaaaatgatactgaaat |
507 |
Q |
| |
|
||||||||||||||||||| || ||||||||||| |||||||||| || || |||||||| |
|
|
| T |
16520834 |
taacagccatccaaaaactcgtactaaggccaaaaagtgtgttgagaacgacactgaaat |
16520893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 144; Significance: 2e-75; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 347 - 522
Target Start/End: Complemental strand, 2606686 - 2606511
Alignment:
| Q |
347 |
tctctgatgtggaaggatgaaactttcaggtattattgtgttgattggtaccttcattggtccaagcaaaccatttaaacttccaagaaaaaaccgtgtt |
446 |
Q |
| |
|
|||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
2606686 |
tctctgatgttgaaggatgaaacatttaggtattattgtgttgattggtaccttcattggtccaagcaaaccatttaaacatccaagaaaaaaccgcgtt |
2606587 |
T |
|
| Q |
447 |
gtaacagccatccaaaaacttgtgctaaggccaaatagtgtgttgaaaatgatactgaaataaagtaatcatcatc |
522 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
2606586 |
gtaacagccatccaaaaactcgtgctaaggccaaatagtgtgttgaagatgatactgaaatcaagtaatcatcatc |
2606511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 210 - 325
Target Start/End: Complemental strand, 2606860 - 2606744
Alignment:
| Q |
210 |
tgtcggacatcgacactt-tcggacaaagattatagaagcttacagttgagagtccaagagcttgcttttcttctcgaaaaatttcagagcagtaagcct |
308 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2606860 |
tgtcggacatcgacacttgtcggagaaagattacagaagcttacagttgagagtccaagagcttgcttttcttctcgaaaaatttcagagcagtatgcct |
2606761 |
T |
|
| Q |
309 |
gttattagaaaaggatg |
325 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
2606760 |
gttattagaaaaggatg |
2606744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 381 - 507
Target Start/End: Complemental strand, 2621274 - 2621148
Alignment:
| Q |
381 |
attgtgttgattggtaccttcattggtccaagcaaaccatttaaacttccaagaaaaaaccgtgttgtaacagccatccaaaaacttgtgctaaggccaa |
480 |
Q |
| |
|
||||| |||| || |||||||||||||||||||||||||||||||| |||||||| || | | ||||||||||||||||||||||||| |||||||| |
|
|
| T |
2621274 |
attgttttgagtgataccttcattggtccaagcaaaccatttaaacctccaagaacgaatctcatcgtaacagccatccaaaaacttgtgcaaaggccaa |
2621175 |
T |
|
| Q |
481 |
atagtgtgttgaaaatgatactgaaat |
507 |
Q |
| |
|
|||||||||||||||| |||||||||| |
|
|
| T |
2621174 |
atagtgtgttgaaaattatactgaaat |
2621148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 2606928 - 2606872
Alignment:
| Q |
20 |
gagatggtgaaactgtgtgtatcaactatacaacagagtcaatttatatatactcaa |
76 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2606928 |
gagatggtgaaactgtgtgtatcaactatacaacagagtcaatttatatatactcaa |
2606872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 399 - 507
Target Start/End: Complemental strand, 36549236 - 36549136
Alignment:
| Q |
399 |
ttcattggtccaagcaaaccatttaaacttccaagaaaaaaccgtgttgtaacagccatccaaaaacttgtgctaaggccaaatagtgtgttgaaaatga |
498 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||| || ||| | ||||||| |||||| ||||||| |||||||||||||||||||||||| | |
|
|
| T |
36549236 |
ttcattagtccaagcaaaccatttaaacctccaaaaacaaatc--------acagccacccaaaagcttgtgcaaaggccaaatagtgtgttgaaaatta |
36549145 |
T |
|
| Q |
499 |
tactgaaat |
507 |
Q |
| |
|
|||||||| |
|
|
| T |
36549144 |
cactgaaat |
36549136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1194 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold1194
Description:
Target: scaffold1194; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 394 - 520
Target Start/End: Original strand, 121 - 247
Alignment:
| Q |
394 |
gtaccttcattggtccaagcaaaccatttaaacttccaagaaaaaaccgtgttgtaacagccatccaaaaacttgtgctaaggccaaatagtgtgttgaa |
493 |
Q |
| |
|
||||||| | ||||||||||| |||||||||||||| |||| ||| | || ||| |||||||||||||| || || |||||||||| ||||||||| |
|
|
| T |
121 |
gtaccttaactggtccaagcacgccatttaaacttccgagaagaaatctcgtgataatagccatccaaaaacccgtactgaggccaaataatgtgttgaa |
220 |
T |
|
| Q |
494 |
aatgatactgaaataaagtaatcatca |
520 |
Q |
| |
|
||||| |||||||| |||||| ||||| |
|
|
| T |
221 |
aatgacactgaaatcaagtaaacatca |
247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University