View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16678_high_12 (Length: 465)
Name: NF16678_high_12
Description: NF16678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16678_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 18 - 459
Target Start/End: Complemental strand, 13976585 - 13976146
Alignment:
| Q |
18 |
tattcctcacccacaataaaaatattggcccactcacaattttttaaaatacatttctatttaaaatacttacggtatttatttgtagataaacctaggc |
117 |
Q |
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| T |
13976585 |
tattcctcacccacaataaaaatattggcccactcacaattttttaaaatacatttctatttaaaatacttacggtatttatttttagataaacctaggc |
13976486 |
T |
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| Q |
118 |
aaatgcatctgagatatatatttgttatgatagcacaaaacgatataagtaannnnnnnnn-atctgatagaaattcatttatgaaaaataaattgagga |
216 |
Q |
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| T |
13976485 |
aaatgcatctgagatatatatttgttatgatagcacaaaacgatataagtaatattttttttatctgatagaaattcatttatgaaaaataaattgagga |
13976386 |
T |
|
| Q |
217 |
gacataaacctaatccaattgaagagaaaaagacaaacnnnnnnnnnnnncttttcatattatgtaagaatttcattcctatatcctcgaatatagtcat |
316 |
Q |
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| T |
13976385 |
gacataaacctaatccaattgaag-gaaaaagacaaacaaaaaaaaag--cttttcatattatgtaagaatttcattcctatatcctcgaatatagtcat |
13976289 |
T |
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| Q |
317 |
tatgttatgtgtcactttatcgcttcaagaaccaatatgataggaaatgtattatgttgttgatcagagatggaagtattgggcacaatgaacccaccaa |
416 |
Q |
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| T |
13976288 |
tatgttatgtgtcacttcatcccttcaagaaccaatatgataggaaatgtattatgttgttgatcagagatggaagtattgggcacaatgaacccaccaa |
13976189 |
T |
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| Q |
417 |
aactacactcatgagaatgagcgatctttacttttttcagtat |
459 |
Q |
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| T |
13976188 |
aactacactcatgagaatgagcgatctttacttttttaagtat |
13976146 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 314
Target Start/End: Complemental strand, 250349 - 250316
Alignment:
| Q |
281 |
taagaatttcattcctatatcctcgaatatagtc |
314 |
Q |
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| T |
250349 |
taagaatttcattcctatatgctcgaatatagtc |
250316 |
T |
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