View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16678_high_22 (Length: 356)
Name: NF16678_high_22
Description: NF16678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16678_high_22 |
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Alignment Details
Target: chr6 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 219618 - 219280
Alignment:
| Q |
1 |
cggatgtcgaagaatatcaattgtgacaaactaaattccaataatactatatatagctaaaagttaaaacttgaaagtaacaatgaattaatattttaaa |
100 |
Q |
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| T |
219618 |
cggatgtcggggaatatcaattgtgacaaactaaattccaataatactatatatagctaaaagttaaaacttgaaagtaacaatgaattaatattttaaa |
219519 |
T |
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| Q |
101 |
atgcaaaccttgtagacatatgggcatccagggtaatcaaaatcatctgaattaggttttctcatacgctcagggtgaaattgcaaacccataataaact |
200 |
Q |
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| T |
219518 |
atgcaaaccttgtagacatatgggcatccagggtaatcaaaatcatctgaattaggttttctcatacgctcagggtgaaattgcaaacccataataaact |
219419 |
T |
|
| Q |
201 |
taccctcttctggattataagcataagggtcataaaacccttcaattaaaccatcattagcaaaagccattggaacaaaacgttgtgccaatctcttaac |
300 |
Q |
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| T |
219418 |
taccctcttctggattataagcataagggtcataaaacccttcaattaaaccatcattagcaaaagccattggaacaaaacgttgtgccaatctcttaac |
219319 |
T |
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| Q |
301 |
cccttgatgatgatagctattaaccaaaatctcatccat |
339 |
Q |
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| T |
219318 |
cccttgatgatgatagctattaaccaaaatctcatccat |
219280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 122 - 330
Target Start/End: Original strand, 31651709 - 31651917
Alignment:
| Q |
122 |
gggcatccagggtaatcaaaatcatctgaattaggttttctcatacgctcagggtgaaattgcaaacccataataaacttaccctcttctggattataag |
221 |
Q |
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| T |
31651709 |
gggcatcccggataatcaaattcatctgaatcagctttcctcatccgctcgggatgaaactgcaatcccataataaacttaccctcttctggattataag |
31651808 |
T |
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| Q |
222 |
cataagggtcataaaacccttcaattaaaccatcattagcaaaagccattggaacaaaacgttgtgccaatctcttaaccccttgatgatgatagctatt |
321 |
Q |
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||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||| | ||||||||| |||||||||||||||||||| |
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| T |
31651809 |
catcagggtcataaaacccttcaatcaaaccatcaggagcaaaagccattggaacaaaacgctgtgcaagtctcttaacaccttgatgatgatagctatt |
31651908 |
T |
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| Q |
322 |
aaccaaaat |
330 |
Q |
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| T |
31651909 |
aaccaaaat |
31651917 |
T |
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