View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16678_high_24 (Length: 318)

Name: NF16678_high_24
Description: NF16678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16678_high_24
NF16678_high_24
[»] chr4 (1 HSPs)
chr4 (18-312)||(49832530-49832825)


Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 312
Target Start/End: Original strand, 49832530 - 49832825
Alignment:
Q  18 ccctgccccttcaattactaccacatcctccaaaagtggcacatctcttttcatcccacctttgtgaatgtaatcttttgcgccaggtgcattataggta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49832530 ccctgccccttcaattactaccacatcctccaaaagtggcacatctcttttcatcccacctttgtgaatgtaatcttttgcgccaggtgcattataggta 49832629  T
Q  118 aggtcaagatcacccacaataaacttcactggaactttgacttgagcaccagtccatggagcattgagctcccaatttctacaaatgcaagagaagcgtt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  49832630 aggtcaagatcacccacaataaacttcactggaactttgacttgagcaccagtccatggagcattgagctcccaatttctacaaatgcaagagaagcatt 49832729  T
Q  218 aaggtaaataaacttaagtttagcttagaaagcctatgaaacattgatagagacacaaatgccgtgcagaacaacaa-gaatcaaatttcatctca 312  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||    
T  49832730 aaggtaaataaacttaactttagcttagaaaacctatgaaacattgatagagacacaaataccgtgcagaacaacaaggaatcaaattttatctca 49832825  T

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