View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16678_high_26 (Length: 306)
Name: NF16678_high_26
Description: NF16678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16678_high_26 |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 295
Target Start/End: Complemental strand, 51753936 - 51753659
Alignment:
| Q |
18 |
cttgtaatagcttccaaaactactaagcttagattaattccaaaaatagttgtacctgatagcttgaaactgttattttaccctgcagtgagacttggac |
117 |
Q |
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| T |
51753936 |
cttgtaatagcttccaaaactactaagcttagattaattccaaaaatagttgtacctgatagcttgaaactgttattttaccctgcagtgagacttggac |
51753837 |
T |
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| Q |
118 |
caaagataacagatacagtaaaagggaaattgaggttgggagccagaattcttcaggttggcggagtagaaaaagtgtttatggaactttttagtgttaa |
217 |
Q |
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| T |
51753836 |
caaagataacagatacagtaaaagggaaattgaggttgggagccagaattcttcaggttggcggagtagaaaaagtgtttatggaactttttagtgttaa |
51753737 |
T |
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| Q |
218 |
agatggagagaagctgttgaaagcatcacagtgttacttatcaacaacatcaggtcctatagcaggcctcctcttcat |
295 |
Q |
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| T |
51753736 |
agatggagagaagctgttgaaagcatcacagtgttacttatcaacaacatcaggtcctatagcaggcctcctcttcat |
51753659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 101 - 295
Target Start/End: Complemental strand, 12196369 - 12196175
Alignment:
| Q |
101 |
tgcagtgagacttggaccaaagataacagatacagtaaaagggaaattgaggttgggagccagaattcttcaggttggcggagtagaaaaagtgtttatg |
200 |
Q |
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| T |
12196369 |
tgcagtgaaacttgggccaaacataaccgatacagtgaaaggaaagctgagcttaggagctagaattcttcaagttggaggagtggaaaaggtgttcatg |
12196270 |
T |
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| Q |
201 |
gaactttttagtgttaaagatggagagaagctgttgaaagcatcacagtgttacttatcaacaacatcaggtcctatagcaggcctcctcttcat |
295 |
Q |
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| T |
12196269 |
caactatttagtgtaaaagatggagagaggctactaaaagcatctcaatgttatctatcaacaacatctggtcctctagcaggcctactcttcat |
12196175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 225 - 295
Target Start/End: Complemental strand, 51766496 - 51766426
Alignment:
| Q |
225 |
gagaagctgttgaaagcatcacagtgttacttatcaacaacatcaggtcctatagcaggcctcctcttcat |
295 |
Q |
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| T |
51766496 |
gagaagctgttgaaagcatctcagtgttacctatcaaccacatcaggtcttatagctggcctcctcttcat |
51766426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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