View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16678_high_30 (Length: 294)
Name: NF16678_high_30
Description: NF16678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16678_high_30 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 15 - 274
Target Start/End: Complemental strand, 39333184 - 39332925
Alignment:
| Q |
15 |
ggaggagaagcaaagaaatcagtgtatttcaaaagcatttcttttaaaatcacaaggacaaaatattttttgaatccgaacctgtctattcgatccttaa |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39333184 |
ggaggagaagcaaagaaatcagtgtatttcaaaagcatttcttttaaaatcacaaggacaaaatattttttgaatccgaacctgtctattcgatccttaa |
39333085 |
T |
|
| Q |
115 |
gtttgagcagaaacttttcattgtcctcttcagcaagtctaacaagtctttcgagcaaatcttttctttcttgcagcccaagcttctcaacatcgatctc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||| ||||| |
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| T |
39333084 |
gtttgagcagaaacttttcattgtcctcttcagcaagtctaacaagtctttcgagcaaatctttcttttcttgcatcccaaggttctcaacatcaatctc |
39332985 |
T |
|
| Q |
215 |
aatggcttccccttgaagtgaagtgagcaaacctttcctcaaacgttcaaaagtaggaag |
274 |
Q |
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|||| | | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39332984 |
gatggttccaccttgaagtgaagtgagcaaacctttcctcaaacgttcaaaagtaggaag |
39332925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 22 - 281
Target Start/End: Original strand, 39569365 - 39569621
Alignment:
| Q |
22 |
aagcaaagaaatcagtgtatttcaaaagcatttcttttaaaatcacaaggacaaaatattttttgaatccgaacctgtctattcgatccttaagtttgag |
121 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||| |||| ||||||||| |||||||||||||||||||| |
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| T |
39569365 |
aagcaaagaaatcagtgtatttcaaaagcacttcttttaaaaccacaaggacagt---tttttaaaatctgaacctgtccattcgatccttaagtttgag |
39569461 |
T |
|
| Q |
122 |
cagaaacttttcattgtcctcttcagcaagtctaacaagtctttcgagcaaatcttttctttcttgcagcccaagcttctcaacatcgatctcaatggct |
221 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||| |||| |
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| T |
39569462 |
cagaaacttctcattgtcctcttcagcaagtctaacaagtctttcaagcaaatcttttctttcttgcagcccaagcttctcaatatcaatctcaacggct |
39569561 |
T |
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| Q |
222 |
tccccttgaagtgaagtgagcaaacctttcctcaaacgttcaaaagtaggaagtttctga |
281 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
39569562 |
tccccttgaagtgaagtgagcaaacctttcctcaaacgcgcaaaagtaggaagattctga |
39569621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 93 - 281
Target Start/End: Original strand, 39552595 - 39552783
Alignment:
| Q |
93 |
aacctgtctattcgatccttaagtttgagcagaaacttttcattgtcctcttcagcaagtctaacaagtctttcgagcaaatcttttctttcttgcagcc |
192 |
Q |
| |
|
|||||||| ||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||| || |
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| T |
39552595 |
aacctgtcgattcgatccttgagtttgagcaaaaacttttcattgtcttcttcagcaagtctaacaagtctttcaagtaaatcttttctttcttgcaacc |
39552694 |
T |
|
| Q |
193 |
caagcttctcaacatcgatctcaatggcttccccttgaagtgaagtgagcaaacctttcctcaaacgttcaaaagtaggaagtttctga |
281 |
Q |
| |
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|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39552695 |
caaggttctcaacatcgatctcagtggcttccccttgaagtgaagtgagcaaacctttcctcaaacgttcaaaagtaggaagtttctga |
39552783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 80 - 281
Target Start/End: Complemental strand, 39358965 - 39358764
Alignment:
| Q |
80 |
ttttttgaatccgaacctgtctattcgatccttaagtttgagcagaaacttttcattgtcctcttcagcaagtctaacaagtctttcgagcaaatctttt |
179 |
Q |
| |
|
|||||||||| ||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
39358965 |
ttttttgaattcgaacctatccattcgatccttaagtttgagcagaaacttctcattgtcctcttcagcaagtctaacaagtctttcaagtaaatctttt |
39358866 |
T |
|
| Q |
180 |
ctttcttgcagcccaagcttctcaacatcgatctcaatggcttccccttgaagtgaagtgagcaaacctttcctcaaacgttcaaaagtaggaagtttct |
279 |
Q |
| |
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|||||||||| |||||||||||||||||| | ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
39358865 |
ctttcttgcaacccaagcttctcaacatcaacctcggtggcttccccttgaagtgaagtaagcaaacctttcctcaaacgttcaaaagtaggaagcttct |
39358766 |
T |
|
| Q |
280 |
ga |
281 |
Q |
| |
|
|| |
|
|
| T |
39358765 |
ga |
39358764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 92 - 281
Target Start/End: Complemental strand, 39344377 - 39344188
Alignment:
| Q |
92 |
gaacctgtctattcgatccttaagtttgagcagaaacttttcattgtcctcttcagcaagtctaacaagtctttcgagcaaatcttttctttcttgcagc |
191 |
Q |
| |
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||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| | |
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| T |
39344377 |
gaacctgtccatgcgatccttaagtttgagcagaaacttctcattgtcctcttcagcaagtctaacaagtctttcaagcaaatcttttcttacttgcaac |
39344278 |
T |
|
| Q |
192 |
ccaagcttctcaacatcgatctcaatggcttccccttgaagtgaagtgagcaaacctttcctcaaacgttcaaaagtaggaagtttctga |
281 |
Q |
| |
|
||||||||||||||||| | ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39344277 |
ccaagcttctcaacatcaacctcggtggcttccccttgaagtgaagtaagcaaacctttcctcaaacgttcaaaagtaggaagtttctga |
39344188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 84 - 281
Target Start/End: Original strand, 39543363 - 39543560
Alignment:
| Q |
84 |
ttgaatccgaacctgtctattcgatccttaagtttgagcagaaacttttcattgtcctcttcagcaagtctaacaagtctttcgagcaaatcttttcttt |
183 |
Q |
| |
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|||||| |||||||||| ||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
39543363 |
ttgaattcgaacctgtcgattcgatccttgagtttgagcaaaaacttctcattgtcctcttcagcaagtctaacaagtctttcaagtaaatcttttcttt |
39543462 |
T |
|
| Q |
184 |
cttgcagcccaagcttctcaacatcgatctcaatggcttccccttgaagtgaagtgagcaaacctttcctcaaacgttcaaaagtaggaagtttctga |
281 |
Q |
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|||||| ||||||||||||||||||||||||| ||||||||||||| || ||| ||||||||||||||| |||||| |||||||||||||||||||| |
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| T |
39543463 |
cttgcaacccaagcttctcaacatcgatctcagtggcttccccttgcagcaaagagagcaaacctttccttaaacgtgcaaaagtaggaagtttctga |
39543560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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