View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16678_high_34 (Length: 283)
Name: NF16678_high_34
Description: NF16678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16678_high_34 |
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| [»] scaffold0043 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 49290196 - 49290004
Alignment:
| Q |
1 |
tcatcatcacggaggaaaagcaacgtgattgtaagaggagttctatcggtcactgtaatttcagctgaagacttaccaatagtagattttatgggcaagg |
100 |
Q |
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| T |
49290196 |
tcatcatcacggaggaaaagcaacgtgattgtaagaggagttctatcggtcactgtaatttcagctgaagacttaccaatagtagattttatgggcaagg |
49290097 |
T |
|
| Q |
101 |
ctgacccatttgttgtccttgcattgaaaaaatcagaaaagaaacaaaagacccgagtaagtaagacttatgatgttattgggtttttaaata |
193 |
Q |
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| T |
49290096 |
ctgacccatttgttgtccttgcattgaaaaaatcagaaaagaaacaaaagacccgagtaagtaagacttatgatgttattgggtttttaaata |
49290004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 271
Target Start/End: Complemental strand, 38231455 - 38231406
Alignment:
| Q |
223 |
atacacctcttatgtacaccccatgtgtta-gggtattttaatcatttca |
271 |
Q |
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| T |
38231455 |
atacacctcttatgtacaccccatgtgtcaggggtagtttagtcatttca |
38231406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 223 - 277
Target Start/End: Original strand, 37914265 - 37914319
Alignment:
| Q |
223 |
atacacctcttatgtacaccccatgtgttagggtattttaatcatttcatatcac |
277 |
Q |
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| T |
37914265 |
atacacctcttatgtacaccccatgtaccagggtattttaatcatttcacatcac |
37914319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 277
Target Start/End: Complemental strand, 36315724 - 36315669
Alignment:
| Q |
223 |
atacacctcttatgtacaccccatgtgtta-gggtattttaatcatttcatatcac |
277 |
Q |
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| T |
36315724 |
atacacctcttatgtacacctcatgtgtcaggggtattttaatcatttcacatcac |
36315669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 255
Target Start/End: Original strand, 3830925 - 3830957
Alignment:
| Q |
223 |
atacacctcttatgtacaccccatgtgttaggg |
255 |
Q |
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| T |
3830925 |
atacacctcttatgtacaccccatgtgttaggg |
3830957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 255
Target Start/End: Complemental strand, 16089984 - 16089952
Alignment:
| Q |
223 |
atacacctcttatgtacaccccatgtgttaggg |
255 |
Q |
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| T |
16089984 |
atacacctcttatgtacaccccatgtgttaggg |
16089952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 255
Target Start/End: Complemental strand, 44275869 - 44275837
Alignment:
| Q |
223 |
atacacctcttatgtacaccccatgtgttaggg |
255 |
Q |
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| T |
44275869 |
atacacctcttatgtacaccccatgtgttaggg |
44275837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 223 - 277
Target Start/End: Complemental strand, 46192522 - 46192467
Alignment:
| Q |
223 |
atacacctcttatgtacaccccatgtgtta-gggtattttaatcatttcatatcac |
277 |
Q |
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| T |
46192522 |
atacacctcttatgtacaccccatgtaccaggggtattttaatcatttcacatcac |
46192467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 255
Target Start/End: Original strand, 87190 - 87222
Alignment:
| Q |
223 |
atacacctcttatgtacaccccatgtgttaggg |
255 |
Q |
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|||||||| |||||||||||||||||||||||| |
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| T |
87190 |
atacaccttttatgtacaccccatgtgttaggg |
87222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 262
Target Start/End: Original strand, 27553401 - 27553441
Alignment:
| Q |
223 |
atacacctcttatgtacaccccatgtgttagg-gtatttta |
262 |
Q |
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| T |
27553401 |
atacacctcttatgtacaccctatgtgttaggagtatttta |
27553441 |
T |
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