View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16678_low_11 (Length: 495)
Name: NF16678_low_11
Description: NF16678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16678_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 1 - 479
Target Start/End: Original strand, 13982645 - 13983123
Alignment:
| Q |
1 |
atcatttttgccccataaatctctctctattctttttaccctaaaacacacaaacccatttcctacataaacctcttcatctttcatcactctcacactc |
100 |
Q |
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| T |
13982645 |
atcatttttgccccataaatctctctctattctttttaccctaaaacacacaaacccatttcctacataaacctcttcatctttcatcactctcacactc |
13982744 |
T |
|
| Q |
101 |
tctttccatgttcaaccagtgccatttcaattttttcatctaaccacatcaataaagnnnnnnnnnnnnnnnnnnnnncaataaccccttttcatgaagt |
200 |
Q |
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| T |
13982745 |
tctttccatgttcaaccagtgccatttcaattttttcatctaatcacatcaataaagttttgttttttaagcttttttcaataaccccttttcatgaagt |
13982844 |
T |
|
| Q |
201 |
ttcattattagcacccttttaatcaacctctctttcaatggctgaaagctttgacagtgctgaatctaatcttttatgtagtgaaaacaatagcacatgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13982845 |
ttcattattagcacccttttaatcaacctctctttcaatggctgaaagctttgacagtgctgaatctaatcttttatgtagtgaaaacaatagcacatgt |
13982944 |
T |
|
| Q |
301 |
tttgatgatgttgttgttgatgattctggaatctcaccttcttgggaccacacaaatgttaacttggacaacgttggatcggattcatttctatgttttg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13982945 |
tttgatgatgttgttgttgatgattctggaatctcaccttcttgggaccacacaaatgttaacttggacaacgttggatcggattcatttctatgttttg |
13983044 |
T |
|
| Q |
401 |
ttgcacaaagtgaggaaattgtgaaggttatggttgagaaagagaaggatcatttgcctagagaggattatttgataag |
479 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13983045 |
ttgcacaaagtgaggaaattgtgaaggttatggttgagaaagagaaggatcatttgcctagagaggattatttgataag |
13983123 |
T |
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