View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16678_low_13 (Length: 451)
Name: NF16678_low_13
Description: NF16678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16678_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 150 - 435
Target Start/End: Original strand, 23177758 - 23178042
Alignment:
| Q |
150 |
ttgtttcttccacacataaactgatcagttttgcataatatctttataaggtggtgatgaatttttgaaaagcattggtattaattttgctgatgtgatt |
249 |
Q |
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| T |
23177758 |
ttgtttcttccacacataaactgatcagttatgcataatatctttataaggtggtgatgaattttttaaaagcattggtattaattttgctgatgtgatt |
23177857 |
T |
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| Q |
250 |
cggagtggtgatgcaatggcaatgtcaaaattatccctcaaattccttgcaccattaagagtaagtcacaccaaatttgtttgttannnnnnnngttagg |
349 |
Q |
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| T |
23177858 |
cggagtggtgatgcaatggcactgtcaaatttatccctcaaattccttgcaccattaagagtaagtcacaccaaatttgtttatta-tttttttgttagg |
23177956 |
T |
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| Q |
350 |
tataatattttgatacaaatagataccatagatcaattcgtcaatgtttgttctgattttaaaatacttgcaaccagagtggagac |
435 |
Q |
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| T |
23177957 |
tataatattttgatacaaatagataccatagatcaatttgtcaatgtttcttctgattttataaaacttgcaaccagagtggagac |
23178042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 23177185 - 23177332
Alignment:
| Q |
1 |
atagagtgattatgtaaaatgaatgagtgaaatttaaaattacttgaaaattgaaaagataggaaccctaatcctccaggttccatgttttccttttcct |
100 |
Q |
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| T |
23177185 |
atagagtggttatgtaaaatgaatgagtgaaatttaaaattacttgaaaattgaaaagataggaaccctaatcctccaggttccatgttttccttttcct |
23177284 |
T |
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| Q |
101 |
atttcggctcttcctcatagtctgaccctccataattttcttcttctga |
149 |
Q |
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| T |
23177285 |
attccggctcttcctcatagtctga-cctccataattttcttcttctga |
23177332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 62 - 142
Target Start/End: Complemental strand, 24840262 - 24840182
Alignment:
| Q |
62 |
ggaaccctaatcctccaggttccatgttttccttttcctatttcggctcttcctcatagtctgaccctccataattttctt |
142 |
Q |
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| T |
24840262 |
ggaaccccaaaccttcaggttccatgtcttccttttcctcttttggctcttcctcatagtttgaccgtccataatcttctt |
24840182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 186 - 317
Target Start/End: Original strand, 23223126 - 23223257
Alignment:
| Q |
186 |
aatatctttataaggtggtgatgaatttttgaaaagcattggtattaattttgctgatgtgattcggagtggtgatgcaatggcaatgtcaaaattatcc |
285 |
Q |
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| T |
23223126 |
aataccttcataaggtcgtcatgaatttttggaaagcataggcattaattgtgatgccgtggctcgctgtggtgatgcattggcattgtctgaactatcc |
23223225 |
T |
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| Q |
286 |
ctcaaattccttgcaccattaagagtaagtca |
317 |
Q |
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| T |
23223226 |
ttcaaattccttgcacctctaagagtaagtca |
23223257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 391 - 435
Target Start/End: Original strand, 23223343 - 23223387
Alignment:
| Q |
391 |
caatgtttgttctgattttaaaatacttgcaaccagagtggagac |
435 |
Q |
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| T |
23223343 |
caatgtttgttctgattttaaaaaacatgcaaccagagtggagac |
23223387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 63 - 136
Target Start/End: Original strand, 23512329 - 23512402
Alignment:
| Q |
63 |
gaaccctaatcctccaggttccatgttttccttttcctatttcggctcttcctcatagtctgaccctccataat |
136 |
Q |
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| T |
23512329 |
gaaccccaaacctccaggttccatgttttcctcttcttcttctggctcttcctcatagtctgaccatccataat |
23512402 |
T |
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