View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16678_low_14 (Length: 443)

Name: NF16678_low_14
Description: NF16678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16678_low_14
NF16678_low_14
[»] chr5 (1 HSPs)
chr5 (10-443)||(913179-913612)


Alignment Details
Target: chr5 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 10 - 443
Target Start/End: Original strand, 913179 - 913612
Alignment:
Q  10 ctgagatgaaacctgattctgttatcctttgtactgtgctttctgcttgtggccatgctggaaatttaagctatggcagaacaattcacgagtttgttaa 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  913179 ctgatatgaaacctgattctgttatcctttgtactgtgctttctgcttgtggccatgctggaaatttaagctatggcagaacaattcacgagtttgttaa 913278  T
Q  110 ggataatggttatgctattgactcacatttacagactgctctcattaacatgtatgcaaattgtggtgcaatggatttggctaggaaaatatatgacgga 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  913279 ggataatggttatgctattgactcacatttacagactgctctcattaacatgtatgcaaattgtggtgcaatggatttggctaggaaaatatatgacgga 913378  T
Q  210 ctctcatcgaaacatttgatagtttcaactgcaatgctttctggttatgcaaaacttggaatggttaaggatgctcgtttcatatttgaccaaatgatcg 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  913379 ctctcatcgaaacatttgatagtttcaactgcaatgctttctggttatgcaaaacttggaatggttaaggatgctcgtttcatatttgaccaaatgattg 913478  T
Q  310 aaagggacttggtgtgttggagtgccatgatatctggttatgctgaaagtgatcagcctcaagaggctcttaaattgttcgatgaaatgctacagaagag 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  913479 aaagggacttggtgtgttggagtgccatgatatctggttatgctgaaagtgatcagcctcaagaggctcttaaattgttcgatgaaatgctacagaagag 913578  T
Q  410 atcagtgcctgatcagatcacaatgttgagtgtc 443  Q
    ||||||||||||||||||||||||||||||||||    
T  913579 atcagtgcctgatcagatcacaatgttgagtgtc 913612  T

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