View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16678_low_15 (Length: 441)
Name: NF16678_low_15
Description: NF16678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16678_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 11 - 425
Target Start/End: Original strand, 46631565 - 46631979
Alignment:
| Q |
11 |
aagcaaaggcaacactcagatgtatgcaggctctggtcacagcacaagctagagctcgtgctcaaaggatccgaatggtgtcagaaggaaagcctcatct |
110 |
Q |
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| T |
46631565 |
aagcaaaggcaacactcagatgtatgcaagatctggtcacagcacaagctagagctcgtgctcaaaggatccgaatggtgtcagaaggaaagcctcatct |
46631664 |
T |
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| Q |
111 |
aaatcacagaaatgctatggaaaatgacttgttcaggcaaatatataatgttagttctcttactactactaattaataattatcttttcttaccaatttg |
210 |
Q |
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| T |
46631665 |
aaatcacagaaatgctatggaaaatgacttgttcaggcaaatatataatgttagttctcttactactactaattaataattatcttttcttaccaatttg |
46631764 |
T |
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| Q |
211 |
aatttgattgttgaaattttctgaattgatgtcataaacatgattggaaattatctatatcgaattgaaaacaacattttgttcaagtgtgttttcaatt |
310 |
Q |
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| T |
46631765 |
aatttgattgttgaaattttctgaattgatgtcataaacatgattggaaattatctatatcgaattgaaaacaacatttagttcaagtgtgttttcaatt |
46631864 |
T |
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| Q |
311 |
tgatacataaattttgtaggtaaagaaagtaacaagtttcattttgcattagttaaaacattactctatcatgagccatggcaccacactttatattgaa |
410 |
Q |
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| T |
46631865 |
tgacacataaattttgtaggtaaagaaagtaacaagtttcattttgcattagttaaaacattactctatcatgagccatggcaccacactttatattgaa |
46631964 |
T |
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| Q |
411 |
agtgtgtcagagcat |
425 |
Q |
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|||||||| |||||| |
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| T |
46631965 |
agtgtgtctgagcat |
46631979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 15505848 - 15505904
Alignment:
| Q |
22 |
acactcagatgtatgcaggctctggtcacagcacaagctagagctcgtgctcaaagg |
78 |
Q |
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||||| ||||| ||||| ||| |||||| ||||||||| |||||| ||||||||||| |
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| T |
15505848 |
acactaagatgcatgcaagctttggtcatagcacaagcaagagcttgtgctcaaagg |
15505904 |
T |
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