View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16678_low_16 (Length: 438)
Name: NF16678_low_16
Description: NF16678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16678_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Original strand, 10496825 - 10497239
Alignment:
| Q |
1 |
taaattgcatggtgaagatatctttaaaaaagaaatgagttcctttaagatgttggaaaatgcaatttttaagctcttgttgaattgcataatgatatct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
10496825 |
taaattgcatggtgaagatatctttaaaaaagaaatgagttcctttaagatgttggaaaatgcaatttttaagctcttgttaaattgcataatgatatct |
10496924 |
T |
|
| Q |
101 |
tcattcatcagatcaagttactcaaaatgtgattttcaaggaatattcaactttggagattcaaattcggatacaggtggattttattcagcatttccag |
200 |
Q |
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| T |
10496925 |
tcattcatcagatcaagttactcaaaatgtgattttcaaggaatattcaactttggagattcaaattcggatacaggtggattttattcagcatttccag |
10497024 |
T |
|
| Q |
201 |
cacagcctattccctatggaatgacatatttcaaaacaccagttggacgttcttctgatgggaggctcattgtagattttttgggtaatgatcaatcttc |
300 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10497025 |
cacaacctattccctatggaatgacatatttcaaaacaccagttggacgttcttctgatgggaggctcattgtagattttttgggtaatgatcaatcttc |
10497124 |
T |
|
| Q |
301 |
ataatattatatgtgtattttgttttctatagattccctcaaccgaatgcaatactatttgaggtattaccaaatactaaatgtggacacgtctcccaat |
400 |
Q |
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| T |
10497125 |
ataatattatatgtgtattttgttttctatagattccctcaaccgaatgcaatactatttgaggtattaccaaataataaatgtggacacgtctcccaat |
10497224 |
T |
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| Q |
401 |
cgagatttaaacatt |
415 |
Q |
| |
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| T |
10497225 |
cgagattcaaacatt |
10497239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 180
Target Start/End: Original strand, 37439282 - 37439329
Alignment:
| Q |
133 |
ttttcaaggaatattcaactttggagattcaaattcggatacaggtgg |
180 |
Q |
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||||| || ||||||||||||||||||||||||||| ||||| ||||| |
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| T |
37439282 |
ttttccagcaatattcaactttggagattcaaattctgatactggtgg |
37439329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 264
Target Start/End: Complemental strand, 48255901 - 48255783
Alignment:
| Q |
146 |
ttcaactttggagattcaaattcggatacaggtggattttattcagcatttccagcacagcctattccctatggaatgacatatttcaaaacaccagttg |
245 |
Q |
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||||||||||||||||||||||| ||||| ||||| |||||| |||| ||||| || | || ||| ||||||||||| || ||||| | ||||| || |
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| T |
48255901 |
ttcaactttggagattcaaattcagatactggtggcttttatgcagcttttcctgctgaatctggtccttatggaatgacttacttcaataaaccagctg |
48255802 |
T |
|
| Q |
246 |
gacgttcttctgatgggag |
264 |
Q |
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| || ||||||||||||| |
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| T |
48255801 |
gtcgagcttctgatgggag |
48255783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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