View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16678_low_17 (Length: 401)
Name: NF16678_low_17
Description: NF16678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16678_low_17 |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0536 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 17 - 401
Target Start/End: Complemental strand, 48913120 - 48912735
Alignment:
| Q |
17 |
actagttgccgtgttttccacta-tcaaagattaaagtggcagcctttaacacataacatcacaagtcctcgtgttttcatgaacaaactcttcgttgtg |
115 |
Q |
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| T |
48913120 |
actagttgccgtgttttccactagtcaaagattaaagtggcagcctttaacacataacatcacaagtcctcgtgttttcgtgaacaaactcttcattgtg |
48913021 |
T |
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| Q |
116 |
tatagcacaactaatgtataaatcaatttcgcgatttgataccaaagcgtcatttatgatataatttcattttctcaatacgggtacctttttcaccatt |
215 |
Q |
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| T |
48913020 |
tatagcacaactcatgtataaatcaatttcacgatttgataccaaagcgtcatttatgatataatttcattttctcaatagaggtacctttttcaccatt |
48912921 |
T |
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| Q |
216 |
atgtaccaaaaagtgatatttatttttggtggatagtactcaaaataatagactacatttatgtgtcatacacatagataaataaacaaaaatgactttt |
315 |
Q |
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| T |
48912920 |
atgtaccaaaaagtgatatttatttttggtggatagtactcaaaataatagactacatttatgtgtcatacacatagataaataaacaaaaatgactttt |
48912821 |
T |
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| Q |
316 |
agattagagctttgttgtccctcaatcttttaagataattaaccacagctgttaaattcgaatgagatgaaccaccttctttaatt |
401 |
Q |
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| T |
48912820 |
agattagaggtttgttgtccctcaatcttttaagataattaaccacagctgttaaattcgaatgagatgaaccaccttctttaatt |
48912735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 396
Target Start/End: Complemental strand, 6970 - 6906
Alignment:
| Q |
332 |
gtccctcaatcttttaagataattaaccacagctgttaaattcgaatgagatgaaccaccttctt |
396 |
Q |
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| T |
6970 |
gtccctcaatattttaagatcatcgatcacagccgttaaattcctatgagatgaaccaccttctt |
6906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 394
Target Start/End: Complemental strand, 10988 - 10890
Alignment:
| Q |
296 |
aataaacaaaaatgacttttagattagagctttgttgtccctcaatcttttaagataattaaccacagctgttaaattcgaatgagatgaaccaccttc |
394 |
Q |
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| T |
10988 |
aataaacaaaaatgccttttatactaaaagtttattgtccctcaaacttttaagatcattgatcaacactgttaaatttctatgagatgaaccaccttc |
10890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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