View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16678_low_18 (Length: 401)
Name: NF16678_low_18
Description: NF16678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16678_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 16 - 393
Target Start/End: Complemental strand, 9070612 - 9070233
Alignment:
| Q |
16 |
aaataaatatgtgctacacttttttccttcaccataggtttttccttcatcatgggagaaataaataaccgtgtctaaaattcacattgcaaaggattca |
115 |
Q |
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| T |
9070612 |
aaataaatatgtgctacacttttttccttcaccataggtttttccttcatcatgggagaaataaataaccgtgtctaaaatttacattgcaaaggattca |
9070513 |
T |
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| Q |
116 |
cacaagaaaggtacatatacactcattcatgcaatacattgttgatttcaatgttgaatgtcctactattttgccttcactaaaattagtttccattggg |
215 |
Q |
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| T |
9070512 |
cacaagaaaggtacatatacactctttcatgcaatacattgttgatttcaatgttgaatgtcctactattttgccttcactagaattagtttccattggg |
9070413 |
T |
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| Q |
216 |
t-ttttccctagaaagactttaacaaaatcagttatgattatataatcctaatgcaccctcg-nnnnnnnnccttgaaaccgatttgcaagtttctacat |
313 |
Q |
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| T |
9070412 |
ttttttccctagaaagactttaacaaaatcagttatgattatataatcctaatgcacactcgtttttttttccttgcaaccgatttgcaagtttctacat |
9070313 |
T |
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| Q |
314 |
tgaggaactaccagttcattttattgtgataacatcatcacaaattccatgagtaacccaatttggtaatgttcctttgc |
393 |
Q |
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| T |
9070312 |
tgagaaactaccggttcattttattgtgataacatcatcacaaattccatgagtaacccaatttggtaatgttcctttgc |
9070233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 372
Target Start/End: Original strand, 9289442 - 9289498
Alignment:
| Q |
316 |
aggaactaccagttcattttattgtgataacatcatcacaaattccatgagtaaccc |
372 |
Q |
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| T |
9289442 |
aggaactaccaattctttatgttgtgatagcatcaacacaaataccatgagtaaccc |
9289498 |
T |
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