View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16678_low_20 (Length: 382)
Name: NF16678_low_20
Description: NF16678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16678_low_20 |
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| [»] scaffold0182 (1 HSPs) |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: scaffold0182 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 16 - 363
Target Start/End: Complemental strand, 28540 - 28207
Alignment:
| Q |
16 |
aagaataaagagcggcattgaaagaggtcgaaagagaaaatctactggtagcgtgaaaaaggttggaatttattattttatcaaacttcttaaatcaaac |
115 |
Q |
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| T |
28540 |
aagaataaagagcggcattgaaagaggtcgaaagagaaaatctactggtagcgtgaaaaaggttggaatttattattttatcaaacttcttaa------- |
28448 |
T |
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| Q |
116 |
ttcttaacatattattatttaacatgatttctgattgttgtgatttttgttctgtgattatgtgaaatgaaggctgcaatcgttgaaaaagaagcaatat |
215 |
Q |
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| T |
28447 |
-------catattattatttaacatgatttctgattgttgtgatttttgttctgtgattatgtgaaatgaaggctgcaatcgttgaaaaagaagcaatat |
28355 |
T |
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| Q |
216 |
ttgtcactgatgaagttgtggctgcatcaacatcaatggtataaaagtacatattatgtaggtgactttatagatttcatattaagtggctgcactttga |
315 |
Q |
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| T |
28354 |
ttgtcactgatgaagttgtggctgcatcaacatcaatgatataaaagttcatattatgtaggtgactttatagatttcatattaagtggctgcactttga |
28255 |
T |
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| Q |
316 |
gtaccctgttaattatctcccattttctgctcatttgtcaggcaaaac |
363 |
Q |
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| T |
28254 |
gtaccctgttaattatctcccattttctgctcatttgtcaggcaaaac |
28207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 16 - 363
Target Start/End: Complemental strand, 26396254 - 26395921
Alignment:
| Q |
16 |
aagaataaagagcggcattgaaagaggtcgaaagagaaaatctactggtagcgtgaaaaaggttggaatttattattttatcaaacttcttaaatcaaac |
115 |
Q |
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| T |
26396254 |
aagaataaagagcggcattgaaagaggtcgaaagagaaaatctactggtagcgtgaaaaaggttggaatttattattttatcaaacttcttaa------- |
26396162 |
T |
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| Q |
116 |
ttcttaacatattattatttaacatgatttctgattgttgtgatttttgttctgtgattatgtgaaatgaaggctgcaatcgttgaaaaagaagcaatat |
215 |
Q |
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| T |
26396161 |
-------catattattatttaacatgatttctgattgttgtgatttttgttctgtgattatgtgaaatgaaggctgcaatcgttgaaaaagaagcaatat |
26396069 |
T |
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| Q |
216 |
ttgtcactgatgaagttgtggctgcatcaacatcaatggtataaaagtacatattatgtaggtgactttatagatttcatattaagtggctgcactttga |
315 |
Q |
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||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26396068 |
ttgtcactgatgaagttgtcgctgcatcaatatcaatggtataaaagttcatattatgtaggtgactttatagatttcatattaagtggctgcacattga |
26395969 |
T |
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| Q |
316 |
gtaccctgttaattatctcccattttctgctcatttgtcaggcaaaac |
363 |
Q |
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||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
26395968 |
gtaccctgttaattatctcccattttctgttcatctgtcaggcaaaac |
26395921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 168; Significance: 6e-90; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 16 - 234
Target Start/End: Complemental strand, 275650 - 275446
Alignment:
| Q |
16 |
aagaataaagagcggcattgaaagaggtcgaaagagaaaatctactggtagcgtgaaaaaggttggaatttattattttatcaaacttcttaaatcaaac |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
275650 |
aagaataaagagcggcattgaaagaggtcgaaagagaaaatctactggtagcgtgaaaaaggttggaatttattattttatcaaacttcttaa------- |
275558 |
T |
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| Q |
116 |
ttcttaacatattattatttaacatgatttctgattgttgtgatttttgttctgtgattatgtgaaatgaaggctgcaatcgttgaaaaagaagcaatat |
215 |
Q |
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| T |
275557 |
-------catattattatttaacatgatttctgattgttgtgatttttgttctgtgattatgtgaaatgaaggctgcaatcgttgaaaaagaagcaatat |
275465 |
T |
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| Q |
216 |
ttgtcactgatgaagttgt |
234 |
Q |
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||||| ||||||||||||| |
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| T |
275464 |
ttgtcgctgatgaagttgt |
275446 |
T |
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Back To:
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