View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16678_low_21 (Length: 381)

Name: NF16678_low_21
Description: NF16678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16678_low_21
NF16678_low_21
[»] chr6 (15 HSPs)
chr6 (28-371)||(32598747-32599090)
chr6 (32-162)||(34905378-34905508)
chr6 (32-176)||(12753754-12753898)
chr6 (71-162)||(32112725-32112816)
chr6 (56-162)||(10133166-10133272)
chr6 (32-137)||(31116157-31116262)
chr6 (23-177)||(19090207-19090362)
chr6 (23-137)||(445851-445965)
chr6 (56-162)||(16851981-16852087)
chr6 (71-171)||(16436145-16436245)
chr6 (56-156)||(21987358-21987458)
chr6 (56-123)||(12780806-12780873)
chr6 (85-156)||(17144685-17144756)
chr6 (56-162)||(5106364-5106470)
chr6 (118-172)||(12794811-12794865)
[»] chr3 (34 HSPs)
chr3 (27-137)||(55452048-55452158)
chr3 (23-171)||(41451894-41452042)
chr3 (23-171)||(24734738-24734886)
chr3 (23-137)||(46450098-46450213)
chr3 (56-137)||(18427183-18427264)
chr3 (23-171)||(28529286-28529432)
chr3 (56-160)||(20791362-20791466)
chr3 (67-137)||(46161024-46161094)
chr3 (69-157)||(48351515-48351603)
chr3 (56-171)||(52123955-52124070)
chr3 (59-137)||(752461-752539)
chr3 (56-162)||(20493453-20493559)
chr3 (40-153)||(2419481-2419594)
chr3 (56-137)||(19345033-19345114)
chr3 (57-162)||(38138590-38138695)
chr3 (58-162)||(14236087-14236191)
chr3 (68-171)||(29588732-29588835)
chr3 (59-137)||(742025-742103)
chr3 (104-141)||(138877-138914)
chr3 (32-176)||(5452056-5452198)
chr3 (56-141)||(10948589-10948674)
chr3 (69-162)||(29755579-29755672)
chr3 (56-137)||(37776736-37776817)
chr3 (56-156)||(38414713-38414813)
chr3 (56-128)||(39186030-39186102)
chr3 (91-162)||(2009095-2009166)
chr3 (59-177)||(27243114-27243233)
chr3 (91-137)||(24429058-24429104)
chr3 (91-137)||(43016514-43016560)
chr3 (58-167)||(8824982-8825091)
chr3 (85-133)||(22856271-22856319)
chr3 (85-129)||(29388635-29388679)
chr3 (85-141)||(41607506-41607562)
chr3 (56-175)||(54140887-54141007)
[»] scaffold0018 (1 HSPs)
scaffold0018 (40-162)||(27862-27984)
[»] chr8 (19 HSPs)
chr8 (23-171)||(1977172-1977320)
chr8 (40-162)||(36804847-36804969)
chr8 (85-162)||(6098785-6098862)
chr8 (58-171)||(16983462-16983575)
chr8 (56-162)||(8903918-8904024)
chr8 (23-162)||(5979913-5980051)
chr8 (56-160)||(23685197-23685297)
chr8 (56-162)||(24055933-24056039)
chr8 (23-123)||(32072130-32072230)
chr8 (67-137)||(7493375-7493446)
chr8 (58-137)||(17499266-17499345)
chr8 (56-129)||(8914837-8914910)
chr8 (104-177)||(5095753-5095826)
chr8 (56-137)||(28413902-28413983)
chr8 (56-137)||(43506601-43506682)
chr8 (56-128)||(45246500-45246572)
chr8 (56-162)||(1205893-1206000)
chr8 (32-162)||(31301157-31301286)
chr8 (59-168)||(9952760-9952868)
[»] chr4 (38 HSPs)
chr4 (23-128)||(20225383-20225488)
chr4 (56-162)||(39471223-39471329)
chr4 (40-177)||(24834628-24834765)
chr4 (32-171)||(43771168-43771307)
chr4 (58-162)||(49242238-49242342)
chr4 (58-177)||(49077317-49077436)
chr4 (33-163)||(41153205-41153335)
chr4 (35-137)||(45081775-45081877)
chr4 (83-160)||(37451023-37451100)
chr4 (23-162)||(34129408-34129547)
chr4 (68-162)||(20454616-20454710)
chr4 (56-176)||(13070006-13070127)
chr4 (90-171)||(38537512-38537593)
chr4 (56-171)||(50164461-50164576)
chr4 (56-162)||(19937180-19937286)
chr4 (23-177)||(52671863-52672016)
chr4 (57-162)||(722224-722329)
chr4 (57-162)||(754588-754693)
chr4 (23-176)||(8108989-8109142)
chr4 (91-172)||(19933474-19933555)
chr4 (32-155)||(24938430-24938553)
chr4 (58-137)||(45310981-45311060)
chr4 (104-176)||(18421825-18421897)
chr4 (56-159)||(25719123-25719227)
chr4 (70-162)||(47009269-47009361)
chr4 (56-162)||(19447197-19447304)
chr4 (56-171)||(26361307-26361422)
chr4 (56-129)||(16178649-16178723)
chr4 (83-169)||(40991590-40991676)
chr4 (83-125)||(54543431-54543473)
chr4 (57-162)||(22542448-22542553)
chr4 (118-175)||(41278744-41278801)
chr4 (56-129)||(48339381-48339454)
chr4 (32-129)||(50481586-50481683)
chr4 (83-123)||(4138958-4138998)
chr4 (32-92)||(22592346-22592406)
chr4 (85-129)||(31250924-31250968)
chr4 (92-148)||(48796378-48796434)
[»] chr7 (24 HSPs)
chr7 (23-138)||(33008137-33008252)
chr7 (23-162)||(48374447-48374586)
chr7 (56-171)||(6442231-6442346)
chr7 (23-162)||(22189972-22190111)
chr7 (56-175)||(27888348-27888467)
chr7 (56-162)||(44350810-44350916)
chr7 (84-148)||(1316367-1316431)
chr7 (32-129)||(31502505-31502602)
chr7 (23-162)||(11824104-11824241)
chr7 (67-171)||(25686834-25686938)
chr7 (56-171)||(46517357-46517472)
chr7 (32-162)||(11692221-11692351)
chr7 (31-137)||(12263469-12263575)
chr7 (90-171)||(27949373-27949454)
chr7 (35-99)||(17354598-17354662)
chr7 (83-135)||(19422869-19422921)
chr7 (56-171)||(25428477-25428593)
chr7 (67-162)||(39254160-39254255)
chr7 (23-101)||(19494408-19494486)
chr7 (32-162)||(32205118-32205248)
chr7 (83-171)||(2911854-2911943)
chr7 (56-129)||(23564076-23564149)
chr7 (69-162)||(32605410-32605503)
chr7 (97-141)||(7459450-7459494)
[»] chr2 (30 HSPs)
chr2 (56-175)||(44274300-44274419)
chr2 (56-162)||(12989257-12989363)
chr2 (40-162)||(34142147-34142269)
chr2 (56-137)||(10981584-10981665)
chr2 (40-156)||(25730453-25730569)
chr2 (75-162)||(25238285-25238372)
chr2 (56-171)||(26767760-26767875)
chr2 (32-129)||(9470123-9470220)
chr2 (58-129)||(7919311-7919382)
chr2 (68-159)||(38464241-38464332)
chr2 (23-177)||(42182922-42183077)
chr2 (91-159)||(14489550-14489618)
chr2 (85-180)||(19953490-19953586)
chr2 (67-162)||(6980128-6980223)
chr2 (68-162)||(11539503-11539598)
chr2 (71-157)||(30718340-30718426)
chr2 (92-162)||(45554661-45554731)
chr2 (56-125)||(37652290-37652359)
chr2 (56-175)||(15508980-15509100)
chr2 (83-162)||(2122888-2122967)
chr2 (84-162)||(4552848-4552926)
chr2 (23-172)||(28898034-28898184)
chr2 (57-141)||(12098895-12098980)
chr2 (69-177)||(472156-472264)
chr2 (108-176)||(15508910-15508978)
chr2 (59-123)||(15884498-15884562)
chr2 (105-137)||(27494484-27494516)
chr2 (67-171)||(32856134-32856238)
chr2 (103-171)||(35316400-35316468)
chr2 (85-137)||(36471871-36471923)
[»] chr1 (35 HSPs)
chr1 (23-162)||(15928588-15928725)
chr1 (96-175)||(16948524-16948603)
chr1 (56-175)||(30678906-30679025)
chr1 (57-177)||(8899081-8899201)
chr1 (56-160)||(22540434-22540534)
chr1 (23-162)||(26980270-26980409)
chr1 (58-175)||(25543408-25543524)
chr1 (84-141)||(37552978-37553035)
chr1 (23-166)||(2225257-2225400)
chr1 (85-159)||(15906505-15906579)
chr1 (67-157)||(41948159-41948249)
chr1 (56-175)||(14093995-14094115)
chr1 (71-162)||(8741231-8741322)
chr1 (56-159)||(19101612-19101715)
chr1 (56-167)||(32211787-32211898)
chr1 (91-162)||(39974208-39974279)
chr1 (58-128)||(3872676-3872746)
chr1 (56-159)||(15523276-15523375)
chr1 (56-159)||(15531270-15531369)
chr1 (58-171)||(6133624-6133736)
chr1 (56-177)||(11987692-11987813)
chr1 (69-158)||(15468299-15468388)
chr1 (90-178)||(28109967-28110056)
chr1 (56-137)||(41958149-41958230)
chr1 (35-115)||(24911508-24911588)
chr1 (56-148)||(33193116-33193208)
chr1 (67-177)||(10659762-10659871)
chr1 (91-137)||(12767361-12767407)
chr1 (56-154)||(33114037-33114135)
chr1 (32-137)||(28218081-28218186)
chr1 (71-128)||(47644339-47644396)
chr1 (103-175)||(931487-931559)
chr1 (56-116)||(1093127-1093187)
chr1 (23-99)||(11430474-11430550)
chr1 (69-121)||(49730943-49730995)
[»] chr5 (18 HSPs)
chr5 (32-137)||(5413770-5413875)
chr5 (55-171)||(28611777-28611893)
chr5 (71-162)||(4714830-4714921)
chr5 (56-171)||(34384690-34384805)
chr5 (31-141)||(41330422-41330532)
chr5 (57-162)||(28490730-28490835)
chr5 (56-161)||(30325883-30325988)
chr5 (56-129)||(43405459-43405532)
chr5 (83-171)||(17434849-17434936)
chr5 (58-162)||(25919279-25919383)
chr5 (59-129)||(28090270-28090340)
chr5 (56-129)||(10142017-10142090)
chr5 (56-129)||(34368426-34368499)
chr5 (71-162)||(28223784-28223875)
chr5 (56-162)||(1923560-1923666)
chr5 (69-159)||(13381791-13381881)
chr5 (56-129)||(27592493-27592566)
chr5 (85-125)||(36337935-36337975)
[»] scaffold0194 (1 HSPs)
scaffold0194 (92-162)||(8419-8489)
[»] scaffold0204 (1 HSPs)
scaffold0204 (56-129)||(26903-26976)


Alignment Details
Target: chr6 (Bit Score: 291; Significance: 1e-163; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 28 - 371
Target Start/End: Complemental strand, 32599090 - 32598747
Alignment:
Q  28 tacccactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaaga 127  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32599090 tacccactcttttattggatggaatacatgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaaga 32598991  T
Q  128 gttagtattaaagaaaatgtttaaaagagagtgttactaacattcctcatgatcagatacatctctaggaagcacccaaagaaccggtgtatcctaggtg 227  Q
    || ||||||||||| ||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32598990 gtgagtattaaagagaatgtttaaaagagaatgttgctaacatttctcatgatcagatacatctctaggaagcacccaaagaaccggtgtatcctaggtg 32598891  T
Q  228 tgacccaattatccaaaacaagaactttatctatccggctcattaccaccccatttgagtgaagccaagtaaatttccaacctaaaggatttaaatcctc 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32598890 tgacccaattatccaaaacaagaactttatctatccggctcattaccaccccatttgagtgaagccaagtaaatttccaacctaaaggatttaaatcctc 32598791  T
Q  328 ttagtccacttccaccnnnnnnnttatcaaagattcatctcact 371  Q
    ||||||||||||||||       ||||||||||||||| |||||    
T  32598790 ttagtccacttccaccaaaaaaattatcaaagattcatttcact 32598747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 32 - 162
Target Start/End: Original strand, 34905378 - 34905508
Alignment:
Q  32 cactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagtta 131  Q
    ||||||| ||||||||| |||   |||||||||| ||||||||| ||||| | |||| |||||||||||  |||||||||||||| |||||| ||||| |    
T  34905378 cactcttttattggatgaaatcaatgtatgtcccaccactttgtttgggttcaattttcaaagtgtagacccacaatgatttaaaccaataagagagtga 34905477  T
Q  132 gtattaaagaaaatgtttaaaagagagtgtt 162  Q
    |||||| |||   |||| |||||||||||||    
T  34905478 gtattagagagggtgttcaaaagagagtgtt 34905508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 32 - 176
Target Start/End: Complemental strand, 12753898 - 12753754
Alignment:
Q  32 cactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagtta 131  Q
    |||||||  |||||||  ||||| || ||||||| ||||||||||||||| |||||| ||  ||||| | |||||||||||||||  ||||||||||  |    
T  12753898 cactctttcattggataaaatacatgcatgtcccaccactttgtgtgggttctattttcagggtgtacactcacaatgatttaaactaataaaagagcga 12753799  T
Q  132 gtattaaagaaaatgtttaaaagagagtgttactaacattcctca 176  Q
    |||||| ||| | |||| ||||||||||||| |||  ||||||||    
T  12753798 gtattagagagagtgttgaaaagagagtgttgctagtattcctca 12753754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 71 - 162
Target Start/End: Complemental strand, 32112816 - 32112725
Alignment:
Q  71 tttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgtt 162  Q
    |||||||||||  ||||| |||||||||||| |||||||||||||| |||||| ||||| | ||||| ||| |||||| |||||||||||||    
T  32112816 tttgtgtgggttttattttcaaagtgtagatccacaatgatttaaaacaataagagagtgaatattagagagaatgttcaaaagagagtgtt 32112725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 56 - 162
Target Start/End: Complemental strand, 10133272 - 10133166
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 155  Q
    |||||||||| ||||||| || |||| | |||| |||||||||||  |||||||||||||| |||||||||||| ||||||||||  | | || ||||||    
T  10133272 tgtatgtcccaccactttatgggggttcaattttcaaagtgtagaaccacaatgatttaaaccaataaaagagtgagtattaaagtgagtattcaaaaga 10133173  T
Q  156 gagtgtt 162  Q
    |||||||    
T  10133172 gagtgtt 10133166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 32 - 137
Target Start/End: Complemental strand, 31116262 - 31116157
Alignment:
Q  32 cactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagtta 131  Q
    ||||||||||||||||| |||   |||||||||| | |||||||||| || |||||||||| ||||| |  |||||||||||||| |||||| ||||| |    
T  31116262 cactcttctattggatgaaatcaatgtatgtcccactactttgtgtgtgttctatttccaatgtgtaaacccacaatgatttaaaccaataagagagtga 31116163  T
Q  132 gtatta 137  Q
    ||||||    
T  31116162 gtatta 31116157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 177
Target Start/End: Complemental strand, 19090362 - 19090207
Alignment:
Q  23 tctagtacccactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattc-acaatgatttaaatcaat 121  Q
    ||||| |||||||||| |||||| || |||   |||||||||| ||||||| ||||||| | ||||||||||||||| | | ||| ||| || || ||||    
T  19090362 tctagcacccactcttttattgggtgaaatcaatgtatgtcccaccactttatgtgggttccatttccaaagtgtaggtcctacattgaattcaaccaat 19090263  T
Q  122 aaaagagttagtattaaagaaaatgtttaaaagagagtgttactaacattcctcat 177  Q
    |||||||| |||  || ||| | || | ||||||||||||| ||| ||||||||||    
T  19090262 aaaagagtgagtgctagagagagtgctcaaaagagagtgttgctagcattcctcat 19090207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 23 - 137
Target Start/End: Original strand, 445851 - 445965
Alignment:
Q  23 tctagtacccactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaata 122  Q
    ||||| || |||| || ||||||||| |||   |||||||| | ||||||||||||||| | |||| |||||| |||| ||||||||||||||| |||||    
T  445851 tctagcactcacttttttattggatgaaatcaatgtatgtcacaccactttgtgtgggttcaattttcaaagtctagagtcacaatgatttaaaccaata 445950  T
Q  123 aaagagttagtatta 137  Q
    | ||| | |||||||    
T  445951 agagaatgagtatta 445965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 56 - 162
Target Start/End: Complemental strand, 16852087 - 16851981
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 155  Q
    |||||||||| |||||||||  |||| | |||| |||||||||||  |||||||||||||| |||||| |||||  ||||||  ||  ||||| ||||||    
T  16852087 tgtatgtcccaccactttgtaggggttcaattttcaaagtgtagacccacaatgatttaaaccaataagagagtgggtattagggaggatgttcaaaaga 16851988  T
Q  156 gagtgtt 162  Q
    |||||||    
T  16851987 gagtgtt 16851981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 71 - 171
Target Start/End: Original strand, 16436145 - 16436245
Alignment:
Q  71 tttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgttactaacat 170  Q
    ||||||||||| ||||||| ||||||||||  || || |||||||| ||||||  || | | ||||||| | | |||||||||||||||||| |||||||    
T  16436145 tttgtgtgggttctatttctaaagtgtagacccaaaaagatttaaaccaataatcgactgaatattaaaaagagtgtttaaaagagagtgttgctaacat 16436244  T
Q  171 t 171  Q
    |    
T  16436245 t 16436245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 56 - 156
Target Start/End: Original strand, 21987358 - 21987458
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 155  Q
    ||||| |||| ||||||| || | || ||||||||||||||||||| | |||||||||||| |||||| | ||| ||||||| ||| | |||| ||||||    
T  21987358 tgtatatcccaccactttatgcgagttctatttccaaagtgtagatccgcaatgatttaaaccaataagaaagtgagtattagagagagtgttcaaaaga 21987457  T
Q  156 g 156  Q
    |    
T  21987458 g 21987458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 56 - 123
Target Start/End: Complemental strand, 12780873 - 12780806
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataa 123  Q
    |||||||| | | ||||||||| ||| | |||| |||||||||||| |||||||||||||| ||||||    
T  12780873 tgtatgtctcactactttgtgttggttcaattttcaaagtgtagatccacaatgatttaaaccaataa 12780806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 85 - 156
Target Start/End: Complemental strand, 17144756 - 17144685
Alignment:
Q  85 atttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagag 156  Q
    |||| |||||||||||  ||||||||||||||  |||||| |||| ||||||||||| | || |||||||||    
T  17144756 attttcaaagtgtagacccacaatgatttaaactaataaaggagtaagtattaaagagagtggttaaaagag 17144685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 162
Target Start/End: Original strand, 5106364 - 5106470
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 155  Q
    |||||||||| ||||||||||||||  | |||| ||||||||| |  ||||| |||||||| |||||| ||||| | ||||| |||   |||| ||||||    
T  5106364 tgtatgtcccaccactttgtgtgggatcaattttcaaagtgtacacccacaaggatttaaaccaataatagagtgaatattagagagtgtgttcaaaaga 5106463  T
Q  156 gagtgtt 162  Q
    | |||||    
T  5106464 gggtgtt 5106470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 12794865 - 12794811
Alignment:
Q  118 caataaaagagttagtattaaagaaaatgtttaaaagagagtgttactaacattc 172  Q
    |||||||||| | ||||||| || |||| || |||||||||||||||||||||||    
T  12794865 caataaaagaatgagtattagagtaaatattcaaaagagagtgttactaacattc 12794811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 27 - 137
Target Start/End: Complemental strand, 55452158 - 55452048
Alignment:
Q  27 gtacccactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaag 126  Q
    |||| ||||||| ||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||| ||| ||||||||||| |||| ||||    
T  55452158 gtactcactcttttattggatggaatacatgtatgtcccaccactttgtgtgggttctatttccaaagtgtagactcataatgatttaaaccaatgaaag 55452059  T
Q  127 agttagtatta 137  Q
    ||| |||||||    
T  55452058 agtgagtatta 55452048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 23 - 171
Target Start/End: Complemental strand, 41452042 - 41451894
Alignment:
Q  23 tctagtacccactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaata 122  Q
    |||||||| ||||||| ||||||||| |||    ||||||||| ||||||||||||||| | |||| ||||| |||||  |||||||||||||| |||||    
T  41452042 tctagtactcactcttttattggatgaaatcaaagtatgtcccaccactttgtgtgggttcaattttcaaagagtagacccacaatgatttaaaccaata 41451943  T
Q  123 aaagagttagtattaaagaaaatgtttaaaagagagtgttactaacatt 171  Q
    | ||||| ||||||| ||| | |||| ||||||||||||| ||| ||||    
T  41451942 agagagtgagtattagagagagtgttcaaaagagagtgttgctagcatt 41451894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 171
Target Start/End: Original strand, 24734738 - 24734886
Alignment:
Q  23 tctagtacccactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaata 122  Q
    |||||||| ||||||| ||||||||| |||    ||||||||| ||||||||||||||| | |||| ||||| ||||   |||||||||||||| |||||    
T  24734738 tctagtactcactcttttattggatgaaatcaaagtatgtcccaccactttgtgtgggttcaattttcaaagagtaggcccacaatgatttaaaccaata 24734837  T
Q  123 aaagagttagtattaaagaaaatgtttaaaagagagtgttactaacatt 171  Q
    | ||||| ||||||| ||| | |||| ||||||||||||| ||| ||||    
T  24734838 agagagtgagtattagagagagtgttcaaaagagagtgttgctagcatt 24734886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 137
Target Start/End: Original strand, 46450098 - 46450213
Alignment:
Q  23 tctagtacccactcttctattggatggaatacgtgtatgtcccgccacttt-gtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaat 121  Q
    ||||| || ||||||| |||| ||||||||   |||||||||| ||||||| |||||||| |||||| |||||||||||  |||||||||||||| ||||    
T  46450098 tctagcactcactcttttattagatggaatcaatgtatgtcccaccacttttgtgtgggttctatttgcaaagtgtagacccacaatgatttaaaccaat 46450197  T
Q  122 aaaagagttagtatta 137  Q
    || ||||| |||||||    
T  46450198 aagagagtgagtatta 46450213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 56 - 137
Target Start/End: Complemental strand, 18427264 - 18427183
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtatta 137  Q
    |||||||||| ||| ||||||||||| |||||| |||||||||||  |||||||||||||| |||||| ||||| |||||||    
T  18427264 tgtatgtcccaccattttgtgtgggttctattttcaaagtgtagacccacaatgatttaaaccaataagagagtgagtatta 18427183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 23 - 171
Target Start/End: Original strand, 28529286 - 28529432
Alignment:
Q  23 tctagtacccactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaata 122  Q
    ||||| || ||||||| ||||||||| |||   |||||||||| |||||  |||||||| | |||| |||||||||||  |||||||||||||| |||||    
T  28529286 tctagcactcactcttttattggatgaaatcaatgtatgtcccaccact--gtgtgggttcaattttcaaagtgtagacccacaatgatttaaaccaata 28529383  T
Q  123 aaagagttagtattaaagaaaatgtttaaaagagagtgttactaacatt 171  Q
    | ||||| ||||||| |||   |||| |||||||||||||  |||||||    
T  28529384 agagagtgagtattagagagggtgttcaaaagagagtgttgttaacatt 28529432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 160
Target Start/End: Original strand, 20791362 - 20791466
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 155  Q
    |||||||||| ||||||| || | || ||||||||||||||||||| | |||||||||||| |||||| | ||| ||||||| ||| | |||| ||||||    
T  20791362 tgtatgtcccaccactttatgcgagttctatttccaaagtgtagatccgcaatgatttaaaccaataagaaagtgagtattagagagagtgttcaaaaga 20791461  T
Q  156 gagtg 160  Q
    |||||    
T  20791462 gagtg 20791466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 137
Target Start/End: Original strand, 46161024 - 46161094
Alignment:
Q  67 ccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtatta 137  Q
    ||||||||||| ||| ||||||||||||||||||| || ||||||||||| |||||| ||||| |||||||    
T  46161024 ccactttgtgttggttctatttccaaagtgtagatccataatgatttaaaccaataagagagtgagtatta 46161094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 69 - 157
Target Start/End: Original strand, 48351515 - 48351603
Alignment:
Q  69 actttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagaga 157  Q
    ||||||||||||| | |||| ||||||||| || || |||||||||||||||||| |||   ||||||| |||||||||| ||||||||    
T  48351515 actttgtgtgggttcaattttcaaagtgtatatccataatgatttaaatcaataagagaaagagtattagagaaaatgttcaaaagaga 48351603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 171
Target Start/End: Complemental strand, 52124070 - 52123955
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 155  Q
    |||||||||| | | |||||| |||| | |||| |||||||||||  |||||||||||||| |||||| | ||| ||||||| ||| | |||| ||||||    
T  52124070 tgtatgtcccactattttgtgggggttcaattttcaaagtgtagacccacaatgatttaaaccaataagaaagtgagtattagagagagtgttcaaaaga 52123971  T
Q  156 gagtgttactaacatt 171  Q
    ||||||| ||| ||||    
T  52123970 gagtgttgctagcatt 52123955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 59 - 137
Target Start/End: Original strand, 752461 - 752539
Alignment:
Q  59 atgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtatta 137  Q
    ||||||| ||||||||||||||| ||||||| ||||||||||  ||||||||||||||  ||||| ||| | |||||||    
T  752461 atgtcccaccactttgtgtgggttctatttctaaagtgtagacccacaatgatttaaactaataagagaatgagtatta 752539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 56 - 162
Target Start/End: Complemental strand, 20493559 - 20493453
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 155  Q
    |||||||||  |||||||||| |||| | || | |||||||||||  |||||||||||||| |||||| ||||| |||| || ||| | |||| ||||||    
T  20493559 tgtatgtcctaccactttgtgggggttcaatattcaaagtgtagacccacaatgatttaaaccaataagagagtgagtaatagagagagtgttcaaaaga 20493460  T
Q  156 gagtgtt 162  Q
    |||||||    
T  20493459 gagtgtt 20493453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 153
Target Start/End: Complemental strand, 2419594 - 2419481
Alignment:
Q  40 tattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaa 139  Q
    |||||||||||||   || ||||||  ||||||||  || || |||||||||| |||||||  |||||||||||||| |||||| | ||| |||||||||    
T  2419594 tattggatggaatcaatgcatgtcctaccactttgcatgagttctatttccaatgtgtagacccacaatgatttaaaccaataagaaagtgagtattaaa 2419495  T
Q  140 gaaaatgtttaaaa 153  Q
    |||| |||| ||||    
T  2419494 gaaagtgttcaaaa 2419481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 137
Target Start/End: Complemental strand, 19345114 - 19345033
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtatta 137  Q
    |||||||||| |||||||||  |||| | |||| |||| |||||| ||||||||||||||| |||||||||| | |||||||    
T  19345114 tgtatgtcccaccactttgttggggttcaattttcaaattgtagactcacaatgatttaaaccaataaaagaataagtatta 19345033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 162
Target Start/End: Complemental strand, 38138695 - 38138590
Alignment:
Q  57 gtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagag 156  Q
    |||| |||| ||| ||||||| | | |||| | |||||| ||||| |||||||||||||| |||||| ||||| ||||||||| ||| || | |||||||    
T  38138695 gtatatcccaccattttgtgtagtttctatcttcaaagtatagatccacaatgatttaaaccaataagagagtaagtattaaataaagtgatcaaaagag 38138596  T
Q  157 agtgtt 162  Q
    ||||||    
T  38138595 agtgtt 38138590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 58 - 162
Target Start/End: Original strand, 14236087 - 14236191
Alignment:
Q  58 tatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagaga 157  Q
    |||||||| ||||||| || | || ||||||||||||||||||| |||||| ||||| | |||||||| ||| ||||||| | | | |||| |||| |||    
T  14236087 tatgtcccaccactttatgcgagttctatttccaaagtgtagatccacaataatttagaccaataaaaaagtgagtattagaaagagtgttcaaaacaga 14236186  T
Q  158 gtgtt 162  Q
    |||||    
T  14236187 gtgtt 14236191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 171
Target Start/End: Complemental strand, 29588835 - 29588732
Alignment:
Q  68 cactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgttactaa 167  Q
    |||||| |||| || | |||| |||||||||||  ||||||||||||||||||||| ||||| ||| ||| ||| | |||| |||||||| | ||||||     
T  29588835 cactttatgtgagttcaattttcaaagtgtagacccacaatgatttaaatcaataagagagtgagtgttatagagagtgttcaaaagagaattttactag 29588736  T
Q  168 catt 171  Q
    ||||    
T  29588735 catt 29588732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 137
Target Start/End: Original strand, 742025 - 742103
Alignment:
Q  59 atgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtatta 137  Q
    ||||||| ||||||||||||| | ||||||| ||||||||||  ||||||||||||||  ||||| ||| | |||||||    
T  742025 atgtcccaccactttgtgtggattctatttctaaagtgtagacccacaatgatttaaactaataagagaatgagtatta 742103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 104 - 141
Target Start/End: Original strand, 138877 - 138914
Alignment:
Q  104 acaatgatttaaatcaataaaagagttagtattaaaga 141  Q
    |||||||||||||||||||||||||| |||||||||||    
T  138877 acaatgatttaaatcaataaaagagtaagtattaaaga 138914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 176
Target Start/End: Complemental strand, 5452198 - 5452056
Alignment:
Q  32 cactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagtta 131  Q
    ||||||| ||||||||| |||   ||||| |||| ||||||||||||| | | |||| | |||||||||  | ||| ||||||||||||||| ||||  |    
T  5452198 cactcttttattggatgaaatcaatgtatttcccaccactttgtgtggattcaattttctaagtgtaga--cccaaggatttaaatcaataagagagcga 5452101  T
Q  132 gtattaaagaaaatgtttaaaagagagtgttactaacattcctca 176  Q
    |||||  ||| | |||| ||||||||||||| ||| |||| ||||    
T  5452100 gtattggagagagtgttcaaaagagagtgttgctagcattactca 5452056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 141
Target Start/End: Complemental strand, 10948674 - 10948589
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaaga 141  Q
    ||||||| || |||||||||||  || | ||||  |||||||| |  |||||||||||||| |||||||||||| |||||||||||    
T  10948674 tgtatgttccaccactttgtgtttgttcaatttttaaagtgtaaacccacaatgatttaaaccaataaaagagtgagtattaaaga 10948589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 162
Target Start/End: Original strand, 29755579 - 29755672
Alignment:
Q  69 actttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgtt 162  Q
    ||||||||||||| | |||| ||||||||||||  ||||||||||||| |||||| || ||  |||||| ||  | |||| |||||||||||||    
T  29755579 actttgtgtgggttcaattttcaaagtgtagatcaacaatgatttaaaccaataagagggtaggtattagagggagtgttcaaaagagagtgtt 29755672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 137
Target Start/End: Complemental strand, 37776817 - 37776736
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtatta 137  Q
    |||||||||  ||||||||||||||| | |||| |||||||||||   ||||||||||||| || ||| ||||| |||||||    
T  37776817 tgtatgtcctaccactttgtgtgggttcaattttcaaagtgtagacctacaatgatttaaaccactaagagagtgagtatta 37776736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 156
Target Start/End: Original strand, 38414713 - 38414813
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 155  Q
    |||||||||| ||| |||||||||||   ||||  ||||||||||| ||| || ||||||| |||||| ||||| ||| ||||||| |||| | ||||||    
T  38414713 tgtatgtcccaccattttgtgtgggtttaatttttaaagtgtagatccacgataatttaaaccaataagagagtgagtgttaaagagaatgctcaaaaga 38414812  T
Q  156 g 156  Q
    |    
T  38414813 g 38414813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 128
Target Start/End: Original strand, 39186030 - 39186102
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagag 128  Q
    |||||||| | ||||||| || | || |||||||||||||||||||   ||||||||||||||||||| ||||    
T  39186030 tgtatgtctcaccactttatgcgagttctatttccaaagtgtagatctgcaatgatttaaatcaataagagag 39186102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 91 - 162
Target Start/End: Original strand, 2009095 - 2009166
Alignment:
Q  91 aaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgtt 162  Q
    |||||||||| ||||||| |||||||||||||||| | | | ||||| |||  |||||||||||||| ||||    
T  2009095 aaagtgtagactcacaataatttaaatcaataaaaaaatgaatattagagaggatgtttaaaagagaatgtt 2009166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 59 - 177
Target Start/End: Original strand, 27243114 - 27243233
Alignment:
Q  59 atgtcccgccactttgtgtgggtgctatttccaaagtgta-gattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagaga 157  Q
    ||||||| ||||||| ||||||| | |||||||||||||| ||  |||| ||||||||  |||| | ||||| ||||||| | | | |||| ||||||||    
T  27243114 atgtcccaccactttatgtgggttccatttccaaagtgtatgacccacattgatttaacccaatgagagagtgagtattagaaagagtgttcaaaagaga 27243213  T
Q  158 gtgttactaacattcctcat 177  Q
    ||||| ||| || |||||||    
T  27243214 gtgttgctagcactcctcat 27243233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 137
Target Start/End: Complemental strand, 24429104 - 24429058
Alignment:
Q  91 aaagtgtagattcacaatgatttaaatcaataaaagagttagtatta 137  Q
    ||||||||||| |||||||||||||| |||||||| ||| |||||||    
T  24429104 aaagtgtagatccacaatgatttaaaccaataaaatagtgagtatta 24429058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 137
Target Start/End: Original strand, 43016514 - 43016560
Alignment:
Q  91 aaagtgtagattcacaatgatttaaatcaataaaagagttagtatta 137  Q
    ||||| |||||||| |||||||||||||||||| ||||| |||||||    
T  43016514 aaagtatagattcataatgatttaaatcaataagagagtgagtatta 43016560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 167
Target Start/End: Complemental strand, 8825091 - 8824982
Alignment:
Q  58 tatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagaga 157  Q
    |||||||| ||| ||| || |||| | |||| |||||| || | ||||||| ||||||| |||||| ||||| ||||||||||| | |||| |||| |||    
T  8825091 tatgtcccaccattttatgcgggttcaattttcaaagtctacactcacaataatttaaaccaataagagagtgagtattaaagagagtgttcaaaacaga 8824992  T
Q  158 gtgttactaa 167  Q
     |||| ||||    
T  8824991 atgttgctaa 8824982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 133
Target Start/End: Complemental strand, 22856319 - 22856271
Alignment:
Q  85 atttccaaagtgtagattcacaatgatttaaatcaataaaagagttagt 133  Q
    |||| |||||||||||| |||||| ||||||| ||||| ||||||||||    
T  22856319 attttcaaagtgtagatccacaattatttaaaccaatagaagagttagt 22856271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 129
Target Start/End: Complemental strand, 29388679 - 29388635
Alignment:
Q  85 atttccaaagtgtagattcacaatgatttaaatcaataaaagagt 129  Q
    |||| ||||||||||| |||||||||||||| ||||||| |||||    
T  29388679 attttcaaagtgtagactcacaatgatttaagtcaataagagagt 29388635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 141
Target Start/End: Original strand, 41607506 - 41607562
Alignment:
Q  85 atttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaaga 141  Q
    |||| |||||||||||| |||| | |||||||||||||||||| | | |||||||||    
T  41607506 attttcaaagtgtagatccacagttatttaaatcaataaaagaataattattaaaga 41607562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 175
Target Start/End: Complemental strand, 54141007 - 54140887
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattc-acaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaag 154  Q
    |||||||||| |||||||  |||||| | |||| |||||||||| ||| ||| |||||| |  ||||||| |||| |||  || ||||| || | |||||    
T  54141007 tgtatgtcccaccactttacgtgggttccattttcaaagtgtaggttctacattgatttcatccaataaatgagtgagtgctagagaaagtgctcaaaag 54140908  T
Q  155 agagtgttactaacattcctc 175  Q
    |||||||| ||| ||||||||    
T  54140907 agagtgttgctagcattcctc 54140887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 40 - 162
Target Start/End: Original strand, 27862 - 27984
Alignment:
Q  40 tattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaa 139  Q
    |||||||||||||   |||||||||| ||||||||||||||| ||||||||||||||||||  |||||||||||||| |||||| ||||| |||||||||    
T  27862 tattggatggaatcaatgtatgtcccaccactttgtgtgggttctatttccaaagtgtagacccacaatgatttaaaccaataagagagtgagtattaaa 27961  T
Q  140 gaaaatgtttaaaagagagtgtt 162  Q
    || | |||| ||||||| |||||    
T  27962 gagagtgttcaaaagagggtgtt 27984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 23 - 171
Target Start/End: Complemental strand, 1977320 - 1977172
Alignment:
Q  23 tctagtacccactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaata 122  Q
    ||||| || ||||||||| ||||||| |||   |||||||||  ||||||||||||||| | |||| |||||||||||| |||||||||||||| |||||    
T  1977320 tctagcactcactcttctgttggatgaaatcaatgtatgtccaaccactttgtgtgggttcaattttcaaagtgtagatccacaatgatttaaaccaata 1977221  T
Q  123 aaagagttagtattaaagaaaatgtttaaaagagagtgttactaacatt 171  Q
    ||||||| ||||||| |||   |||| ||||||| ||||||||| ||||    
T  1977220 aaagagtgagtattagagagtgtgttcaaaagagtgtgttactagcatt 1977172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 40 - 162
Target Start/End: Complemental strand, 36804969 - 36804847
Alignment:
Q  40 tattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaa 139  Q
    |||||||||||||   |||||||||| ||| ||||||||||| | |||| |||| | || || |||||| |||||||||||||| ||||| ||||||| |    
T  36804969 tattggatggaatcaatgtatgtcccaccattttgtgtgggttcaattttcaaaatatacatccacaataatttaaatcaataagagagtaagtattaga 36804870  T
Q  140 gaaaatgtttaaaagagagtgtt 162  Q
    || |||||| |||||||||||||    
T  36804869 gagaatgttgaaaagagagtgtt 36804847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 85 - 162
Target Start/End: Complemental strand, 6098862 - 6098785
Alignment:
Q  85 atttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgtt 162  Q
    |||| |||||||||||| |||||| |||||||||||||| ||||| ||||||| ||| ||||||||||||||||||||    
T  6098862 attttcaaagtgtagatccacaataatttaaatcaataagagagtgagtattagagagaatgtttaaaagagagtgtt 6098785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 58 - 171
Target Start/End: Original strand, 16983462 - 16983575
Alignment:
Q  58 tatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagaga 157  Q
    ||||||||  ||||||||| |||| | |||| ||||||||||| ||||||||||||||| |||||| ||||| ||||||| ||| | |||| ||||||||    
T  16983462 tatgtcccatcactttgtgggggttcaattttcaaagtgtagactcacaatgatttaaaccaataagagagtgagtattagagagagtgttcaaaagaga 16983561  T
Q  158 gtgttactaacatt 171  Q
    ||||| ||| ||||    
T  16983562 gtgttgctagcatt 16983575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 56 - 162
Target Start/End: Original strand, 8903918 - 8904024
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 155  Q
    |||||||||| ||||||||||| ||| | |||| |||||||||||  |||||||||||||| |||||| ||||| |||| || | || ||||| ||||||    
T  8903918 tgtatgtcccaccactttgtgtcggttcaattttcaaagtgtagacccacaatgatttaaaccaataagagagtaagtaatagaaaagatgttcaaaaga 8904017  T
Q  156 gagtgtt 162  Q
    |||||||    
T  8904018 gagtgtt 8904024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 23 - 162
Target Start/End: Original strand, 5979913 - 5980051
Alignment:
Q  23 tctagtacccactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaata 122  Q
    |||||||  |||||||||||||||||  ||   |||||||||| ||||||||||||||| | |||| ||||||||  | |||||||| ||| || |||||    
T  5979913 tctagtagacactcttctattggatgagatcaatgtatgtcccaccactttgtgtgggttcaattttcaaagtgtgaactcacaatggttt-aaccaata 5980011  T
Q  123 aaagagttagtattaaagaaaatgtttaaaagagagtgtt 162  Q
    | ||||| ||||||| ||| | |||| |||||||||||||    
T  5980012 agagagtgagtattagagagagtgttcaaaagagagtgtt 5980051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 56 - 160
Target Start/End: Original strand, 23685197 - 23685297
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 155  Q
    |||||||||| ||||||| || | || ||||||||||||||||||||| |||||||||||| |||||    ||||||||||| ||| | |||| ||||||    
T  23685197 tgtatgtcccaccactttatgcgagttctatttccaaagtgtagattcgcaatgatttaaaccaata----agttagtattagagagagtgttcaaaaga 23685292  T
Q  156 gagtg 160  Q
    |||||    
T  23685293 gagtg 23685297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 162
Target Start/End: Complemental strand, 24056039 - 24055933
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 155  Q
    |||||||||| |||||||||||  || | |||| |||||||||||  |||||| ||||||| |||||| ||||| ||| ||| ||||| |||| ||||||    
T  24056039 tgtatgtcccaccactttgtgtaagttcaattttcaaagtgtagacccacaattatttaaaccaataagagagtgagtgttagagaaagtgttcaaaaga 24055940  T
Q  156 gagtgtt 162  Q
    |||||||    
T  24055939 gagtgtt 24055933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 23 - 123
Target Start/End: Original strand, 32072130 - 32072230
Alignment:
Q  23 tctagtacccactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaata 122  Q
    ||||| || ||||||| ||||||||| |||   |||||||||| ||||||||||||||| | ||||  ||||||||||  |||||| |||||||||||||    
T  32072130 tctagcactcactcttttattggatgaaatgaatgtatgtcccaccactttgtgtgggttcaatttttaaagtgtagacccacaattatttaaatcaata 32072229  T
Q  123 a 123  Q
    |    
T  32072230 a 32072230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 137
Target Start/End: Complemental strand, 7493446 - 7493375
Alignment:
Q  67 ccactttgtgt-gggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtatta 137  Q
    ||||||||||| |||| |||||| ||||||||||| ||||||||||||||| |||||| ||||| |||||||    
T  7493446 ccactttgtgttgggttctattttcaaagtgtagactcacaatgatttaaaccaataagagagtgagtatta 7493375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 137
Target Start/End: Complemental strand, 17499345 - 17499266
Alignment:
Q  58 tatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtatta 137  Q
    |||||||| ||| ||||||| ||| | |||| |||||||||||| |||||||||||||| |||||| ||||| |||||||    
T  17499345 tatgtcccaccattttgtgttggttcaattttcaaagtgtagatccacaatgatttaaaccaataagagagtgagtatta 17499266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 129
Target Start/End: Original strand, 8914837 - 8914910
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagt 129  Q
    |||||||||| ||||||||||||||| |  ||| |||||||||||  |||||||||||||| |||||| |||||    
T  8914837 tgtatgtcccaccactttgtgtgggttcatttttcaaagtgtagacccacaatgatttaaaccaataagagagt 8914910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 104 - 177
Target Start/End: Complemental strand, 5095826 - 5095753
Alignment:
Q  104 acaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgttactaacattcctcat 177  Q
    ||||||||||||| |||||| ||||| ||||||| |||  ||||||||||| ||||||| ||| |||| |||||    
T  5095826 acaatgatttaaaccaataagagagtgagtattagagaggatgtttaaaagtgagtgttcctagcattgctcat 5095753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 137
Target Start/End: Complemental strand, 28413983 - 28413902
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtatta 137  Q
    |||||||||| |||||||||||| || | |||| |||||| ||||  || ||||||||||| |||||||||| | |||||||    
T  28413983 tgtatgtcccaccactttgtgtgagttcaattttcaaagtatagacccataatgatttaaaccaataaaagaatgagtatta 28413902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 137
Target Start/End: Original strand, 43506601 - 43506682
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtatta 137  Q
    ||||||| || ||||||||||||||| ||| || ||| |||||||  |||||||||||||  |||||| ||||| |||||||    
T  43506601 tgtatgttccaccactttgtgtgggttctactttcaatgtgtagacccacaatgatttaagccaataagagagtgagtatta 43506682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 128
Target Start/End: Original strand, 45246500 - 45246572
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagag 128  Q
    |||||||| | ||||||| || | || |||||||||||||||||||   ||||||||||||||||||| ||||    
T  45246500 tgtatgtctcaccactttatgcgagttctatttccaaagtgtagatctgcaatgatttaaatcaataagagag 45246572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 56 - 162
Target Start/End: Original strand, 1205893 - 1206000
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagat-tcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaag 154  Q
    |||||||| | ||||||| | ||||| ||||||||||||||||| | | ||| |||||| | ||||||||||||| |||  |||||| | |||| ||||     
T  1205893 tgtatgtctcaccactttatatgggttctatttccaaagtgtaggtcttacattgatttcactcaataaaagagtgagtgctaaagagagtgttcaaaat 1205992  T
Q  155 agagtgtt 162  Q
    ||||||||    
T  1205993 agagtgtt 1206000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 162
Target Start/End: Original strand, 31301157 - 31301286
Alignment:
Q  32 cactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagtta 131  Q
    ||||||| ||||||||| |||   ||||||| || |||||||||||| || |||||| ||| ||||||| ||| ||| ||||||| |||||| ||| | |    
T  31301157 cactcttttattggatgaaatcaatgtatgttccaccactttgtgtgagttctattttcaatgtgtaga-tcataataatttaaaccaataagagaatga 31301255  T
Q  132 gtattaaagaaaatgtttaaaagagagtgtt 162  Q
     ||||  ||| |||||  |||||||||||||    
T  31301256 atatttgagataatgtacaaaagagagtgtt 31301286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 168
Target Start/End: Complemental strand, 9952868 - 9952760
Alignment:
Q  59 atgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagag 158  Q
    ||||||| |||||||||||| || | |||| ||||||||| |  |||||||||||||| |||||| | | | |||||| |||| | || || ||||||||    
T  9952868 atgtcccaccactttgtgtgagttcaattttcaaagtgtaaacccacaatgatttaaaccaataagataatgagtatttaagagagtg-ttcaaagagag 9952770  T
Q  159 tgttactaac 168  Q
    |||| |||||    
T  9952769 tgttgctaac 9952760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 23 - 128
Target Start/End: Complemental strand, 20225488 - 20225383
Alignment:
Q  23 tctagtacccactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaata 122  Q
    ||||| || ||||||| ||||||||||||| | || ||||||| ||||||| ||||||| |||||||||||||||||| ||||||||||||||| |||||    
T  20225488 tctagcactcactcttttattggatggaatccatgcatgtcccaccactttttgtgggttctatttccaaagtgtagactcacaatgatttaaaccaata 20225389  T
Q  123 aaagag 128  Q
    | ||||    
T  20225388 agagag 20225383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 56 - 162
Target Start/End: Original strand, 39471223 - 39471329
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 155  Q
    |||||||||| ||||||||||| ||| | || | |||||||||||  |||||||||||||| |||||| ||||| ||||||| ||| |||||||||||||    
T  39471223 tgtatgtcccaccactttgtgttggttcaatcttcaaagtgtagacccacaatgatttaaaccaataagagagtgagtattagagagaatgtttaaaaga 39471322  T
Q  156 gagtgtt 162  Q
    |||||||    
T  39471323 gagtgtt 39471329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 40 - 177
Target Start/End: Original strand, 24834628 - 24834765
Alignment:
Q  40 tattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaa 139  Q
    |||||||||||||   |||||||||| ||| ||||||||||| | |||| |||||||||||  |||||| ||||||| |||||| ||||| | ||||| |    
T  24834628 tattggatggaatcaatgtatgtcccaccattttgtgtgggttcaattttcaaagtgtagacccacaataatttaaaccaataagagagtgactattaga 24834727  T
Q  140 gaaaatgtttaaaagagagtgttactaacattcctcat 177  Q
    || |  ||||||||||||||||| ||| ||||||||||    
T  24834728 gagagagtttaaaagagagtgttgctagcattcctcat 24834765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 32 - 171
Target Start/End: Original strand, 43771168 - 43771307
Alignment:
Q  32 cactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagtta 131  Q
    ||||||| ||||||||| |||   |||||||||| ||||| ||||||||| | |||| |||||||||||  |||||||||||||| |||||| ||||| |    
T  43771168 cactcttttattggatgaaatcaatgtatgtcccaccactctgtgtgggttcaattttcaaagtgtagacccacaatgatttaaaccaataagagagtga 43771267  T
Q  132 gtattaaagaaaatgtttaaaagagagtgttactaacatt 171  Q
    ||||||||||   |||| ||||||||| ||| ||| ||||    
T  43771268 gtattaaagagggtgttcaaaagagagcgttgctagcatt 43771307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 58 - 162
Target Start/End: Original strand, 49242238 - 49242342
Alignment:
Q  58 tatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagaga 157  Q
    ||||||||  |||||||||||||| | |||| ||| ||||||||||||||||||||||| |||||| ||| | ||||| | ||| | |||||||||||||    
T  49242238 tatgtcccatcactttgtgtgggttcaattttcaatgtgtagattcacaatgatttaaaccaataagagaatgagtatcatagagagtgtttaaaagaga 49242337  T
Q  158 gtgtt 162  Q
    |||||    
T  49242338 gtgtt 49242342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 58 - 177
Target Start/End: Original strand, 49077317 - 49077436
Alignment:
Q  58 tatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagaga 157  Q
    |||||||| ||||||||||||||| | ||||  ||||||||||  |||||||||||||| |||||| ||  | |||| | |||||  |||||||||||||    
T  49077317 tatgtcccaccactttgtgtgggttcaatttttaaagtgtagacccacaatgatttaaaccaataagagtttgagtactcaagaaggtgtttaaaagaga 49077416  T
Q  158 gtgttactaacattcctcat 177  Q
    ||||||||| |||| |||||    
T  49077417 gtgttactagcattactcat 49077436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 33 - 163
Target Start/End: Complemental strand, 41153335 - 41153205
Alignment:
Q  33 actcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttag 132  Q
    |||||| ||||||||| ||| | || ||||||| ||||||||||| ||| ||||||| |||||||| ||||||||||||||| | |||||||| ||| |     
T  41153335 actcttttattggatgaaattcatgcatgtcccaccactttgtgtaggttctatttctaaagtgtacattcacaatgatttagaccaataaaaaagtaaa 41153236  T
Q  133 tattaaagaaaatgtttaaaagagagtgtta 163  Q
    || |||| ||| ||||  ||||||| |||||    
T  41153235 tactaaaaaaagtgttctaaagagaatgtta 41153205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 35 - 137
Target Start/End: Complemental strand, 45081877 - 45081775
Alignment:
Q  35 tcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagta 134  Q
    |||| |||| |||||||||| || |||| |  ||| ||||||||||| |||||||||||||||| | ||||||| ||||||| |||||||||||| ||||    
T  45081877 tcttttatttgatggaatacatgcatgttctaccattttgtgtgggtcctatttccaaagtgtacactcacaataatttaaaccaataaaagagtgagta 45081778  T
Q  135 tta 137  Q
    |||    
T  45081777 tta 45081775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 83 - 160
Target Start/End: Complemental strand, 37451100 - 37451023
Alignment:
Q  83 ctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtg 160  Q
    |||||| ||||||||||| || |||||||||||| |||||||||||| ||||||| ||||  ||||||||||||||||    
T  37451100 ctattttcaaagtgtagactcgcaatgatttaaaccaataaaagagtgagtattagagaaggtgtttaaaagagagtg 37451023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 23 - 162
Target Start/End: Complemental strand, 34129547 - 34129408
Alignment:
Q  23 tctagtacccactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaata 122  Q
    ||||| || |||||||||||||||||  ||   ||||| |||| |||||||||||| || | |||| |||||||| || |||||||| |||||| |||||    
T  34129547 tctagcactcactcttctattggatgagatcaatgtatatcccaccactttgtgtgtgttcaattttcaaagtgtggactcacaatggtttaaaccaata 34129448  T
Q  123 aaagagttagtattaaagaaaatgtttaaaagagagtgtt 162  Q
    ||||||| ||||||| |||   |||| | |||||||||||    
T  34129447 aaagagtgagtattagagattgtgttcagaagagagtgtt 34129408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 162
Target Start/End: Original strand, 20454616 - 20454710
Alignment:
Q  68 cactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgtt 162  Q
    |||||||||| ||| | |||| |||||||||||| ||||||||||||||||||||| ||||| ||| ||| ||| | |||| |||||||| ||||    
T  20454616 cactttgtgttggttcaattttcaaagtgtagatccacaatgatttaaatcaataacagagtgagtgttagagagagtgttcaaaagagaatgtt 20454710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 56 - 176
Target Start/End: Original strand, 13070006 - 13070127
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattc-acaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaag 154  Q
    ||||||| || ||||||| ||||||| | |||| |||||||||| | | ||| |||||| | ||||||||||||| ||| ||| |||||||||| |||||    
T  13070006 tgtatgttccaccactttatgtgggttccattttcaaagtgtaggtcctacattgattttactcaataaaagagtgagtgttagagaaaatgttcaaaag 13070105  T
Q  155 agagtgttactaacattcctca 176  Q
    |||||||| ||| || ||||||    
T  13070106 agagtgttgctagcactcctca 13070127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 90 - 171
Target Start/End: Complemental strand, 38537593 - 38537512
Alignment:
Q  90 caaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgttactaacatt 171  Q
    ||||||||||||||| |||||||||||||||||||||| | | ||||| ||| | |||| |||||| |||||| ||||||||    
T  38537593 caaagtgtagattcataatgatttaaatcaataaaagaatgattattagagagagtgttcaaaagaaagtgttgctaacatt 38537512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 171
Target Start/End: Original strand, 50164461 - 50164576
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 155  Q
    ||||| |||| ||| |||||| |||| | |||| ||||||||||| ||||||||||||||| |||||| | ||| || |||| ||| | |||| ||||||    
T  50164461 tgtatctcccaccattttgtgggggttcaattttcaaagtgtagactcacaatgatttaaaccaataagaaagtgagcattagagagagtgttcaaaaga 50164560  T
Q  156 gagtgttactaacatt 171  Q
     |||||||||| ||||    
T  50164561 tagtgttactagcatt 50164576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 56 - 162
Target Start/End: Complemental strand, 19937286 - 19937180
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 155  Q
    |||||||||| ||| | | |||| || |||||| |||||| |||||  ||||||||| ||| ||| |||||||| || |||||||| | |||||||||||    
T  19937286 tgtatgtcccaccattatatgtgagttctattttcaaagtatagatcgacaatgattcaaaccaacaaaagagtgagaattaaagagagtgtttaaaaga 19937187  T
Q  156 gagtgtt 162  Q
    |||||||    
T  19937186 gagtgtt 19937180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 23 - 177
Target Start/End: Original strand, 52671863 - 52672016
Alignment:
Q  23 tctagtacccactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaata 122  Q
    |||||||| |||| || ||||||||| ||||  |||||||||| ||| ||| |||  || | ||||  |||||||| |||| ||||||||||||  ||||    
T  52671863 tctagtactcacttttttattggatgaaataaatgtatgtcccaccattttatgtaagttcaatttttaaagtgtaaattctcaatgatttaaactaata 52671962  T
Q  123 aaagagttagtattaaagaaaatgtttaaaagagagtgttactaacattcctcat 177  Q
    | | ||| ||||||||||| | ||||||||||| | |||| |||| |||||||||    
T  52671963 agatagtgagtattaaagagagtgtttaaaagataatgttgctaa-attcctcat 52672016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 162
Target Start/End: Original strand, 722224 - 722329
Alignment:
Q  57 gtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagag 156  Q
    ||||||||| |||||||||||  || | ||||  ||||||||||  |||||||||||||| |||||| ||||| ||||||| ||| | |||| ||||||     
T  722224 gtatgtcccaccactttgtgtaagttcaatttttaaagtgtagacccacaatgatttaaaccaataagagagtgagtattagagagagtgttcaaaagaa 722323  T
Q  157 agtgtt 162  Q
    ||||||    
T  722324 agtgtt 722329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 162
Target Start/End: Complemental strand, 754693 - 754588
Alignment:
Q  57 gtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagag 156  Q
    ||||||||| |||||||||||  || | ||||  ||||||||||  |||||||||||||| |||||| ||||| ||||||| ||| | |||| ||||||     
T  754693 gtatgtcccaccactttgtgtaagttcaatttttaaagtgtagacccacaatgatttaaaccaataagagagtgagtattagagagagtgttcaaaagaa 754594  T
Q  157 agtgtt 162  Q
    ||||||    
T  754593 agtgtt 754588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 176
Target Start/End: Original strand, 8108989 - 8109142
Alignment:
Q  23 tctagtacccactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaata 122  Q
    ||||| || ||||||| |||||| || |||   |||||||||| | | |||||||  || | |||| |||||||||||  |||||||||||||| |||||    
T  8108989 tctagcactcactcttttattgggtgaaatcaatgtatgtcccactaatttgtgtttgttcaattttcaaagtgtagacccacaatgatttaaaccaata 8109088  T
Q  123 aaagagttagtattaaagaaaatgtttaaaagagagtgttactaacattcctca 176  Q
    | | ||| ||||||| ||| | |||| ||||||||||||| ||| |||| ||||    
T  8109089 agaaagtgagtattagagagagtgttcaaaagagagtgttgctagcattactca 8109142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 172
Target Start/End: Complemental strand, 19933555 - 19933474
Alignment:
Q  91 aaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgttactaacattc 172  Q
    |||||||||| | |||||||||||||  |||||| ||||| |||||||||| | |||| |||| |||||||| |||||||||    
T  19933555 aaagtgtagactaacaatgatttaaactaataaatgagttggtattaaagagagtgttcaaaatagagtgttgctaacattc 19933474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 155
Target Start/End: Complemental strand, 24938553 - 24938430
Alignment:
Q  32 cactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagtta 131  Q
    ||||||| ||||||||| |||   |||||||||| ||| ||||| ||| | | ||||  ||||||||||   ||||||||||||| |||||| ||||| |    
T  24938553 cactcttttattggatgtaatcaatgtatgtcccaccattttgtttggattcaatttttaaagtgtagacctacaatgatttaaaccaataagagagtaa 24938454  T
Q  132 gtattaaagaaaatgtttaaaaga 155  Q
    |||||| ||||| |||| ||||||    
T  24938453 gtattagagaaagtgttgaaaaga 24938430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 137
Target Start/End: Complemental strand, 45311060 - 45310981
Alignment:
Q  58 tatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtatta 137  Q
    |||||||| |||||||||| || | | |||| ||||||| ||| | |||||||||||||||||||| ||||| |||||||    
T  45311060 tatgtcccaccactttgtggggattcaattttcaaagtgaagacttacaatgatttaaatcaataagagagtaagtatta 45310981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 176
Target Start/End: Complemental strand, 18421897 - 18421825
Alignment:
Q  104 acaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgttactaacattcctca 176  Q
    ||||||||||||| |||||||| ||| | ||||||| ||| | || ||||||||||||| |||||||| ||||    
T  18421897 acaatgatttaaaccaataaaaaagtgaatattaaataaagtattcaaaagagagtgttgctaacattactca 18421825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 159
Target Start/End: Complemental strand, 25719227 - 25719123
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtag-attcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaag 154  Q
    |||||||||| ||||||| |||||||   ||||||||| ||||| |  |||||||||||||  |||| | ||||| ||||||| ||||| |||| |||||    
T  25719227 tgtatgtcccaccactttatgtgggtttcatttccaaaatgtaggacccacaatgatttaacccaatcagagagtgagtattagagaaattgttcaaaag 25719128  T
Q  155 agagt 159  Q
    |||||    
T  25719127 agagt 25719123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 162
Target Start/End: Original strand, 47009269 - 47009361
Alignment:
Q  70 ctttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgtt 162  Q
    ||||||||| || | |||| |||||||||||| |||||||||||||| |||||| | ||| ||||||| |||   |||| |||||||| ||||    
T  47009269 ctttgtgtgagttcaattttcaaagtgtagatacacaatgatttaaaccaataagaaagtgagtattagagagggtgttcaaaagagaatgtt 47009361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 56 - 162
Target Start/End: Original strand, 19447197 - 19447304
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattc-acaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaag 154  Q
    |||||||||| ||||||| ||||||| | |||| |||| || ||   | |||||||||||| ||||| | ||||| ||||||||||| | |||| |||||    
T  19447197 tgtatgtcccaccactttatgtgggttccattttcaaaatgcaggaccgacaatgatttaactcaattagagagtgagtattaaagagagtgttcaaaag 19447296  T
Q  155 agagtgtt 162  Q
    ||||||||    
T  19447297 agagtgtt 19447304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 56 - 171
Target Start/End: Complemental strand, 26361422 - 26361307
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 155  Q
    |||||| ||| ||| ||||||||||| | || | |||||||||||  || ||||||||||| ||||||  |||| ||||||| |||   |||| ||||||    
T  26361422 tgtatgacccaccattttgtgtgggttcaatattcaaagtgtagacccataatgatttaaaccaataagtgagtgagtattagagagggtgttcaaaaga 26361323  T
Q  156 gagtgttactaacatt 171  Q
    ||||||| ||| ||||    
T  26361322 gagtgttgctagcatt 26361307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 129
Target Start/End: Original strand, 16178649 - 16178723
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattc-acaatgatttaaatcaataaaagagt 129  Q
    |||||||||| ||||||| ||||||| | ||||||||||||||| ||| ||| |||||| |  ||||||||||||    
T  16178649 tgtatgtcccaccactttatgtgggttccatttccaaagtgtaggttctacattgatttcatccaataaaagagt 16178723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 169
Target Start/End: Complemental strand, 40991676 - 40991590
Alignment:
Q  83 ctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgttactaaca 169  Q
    |||||||  |||||||||  |||||||||||||| |||||||||||| ||||| | ||| | |||| |||| | |||||| ||||||    
T  40991676 ctatttctgaagtgtagacccacaatgatttaaaccaataaaagagtgagtatcagagagagtgttcaaaaaaaagtgttgctaaca 40991590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 125
Target Start/End: Original strand, 54543431 - 54543473
Alignment:
Q  83 ctatttccaaagtgtagattcacaatgatttaaatcaataaaa 125  Q
    |||||||||| ||||||||||| ||||||||||| ||||||||    
T  54543431 ctatttccaatgtgtagattcaaaatgatttaaaccaataaaa 54543473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 162
Target Start/End: Original strand, 22542448 - 22542553
Alignment:
Q  57 gtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagag 156  Q
    |||||| || ||||||||||||||| | |||| |||||  |||   ||||||||||||||  ||||| ||||| ||||||||| | | |||| ||||||     
T  22542448 gtatgttccaccactttgtgtgggttcaattttcaaagaatagtcccacaatgatttaaactaataagagagtgagtattaaaaagagtgttcaaaagat 22542547  T
Q  157 agtgtt 162  Q
    ||||||    
T  22542548 agtgtt 22542553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 175
Target Start/End: Original strand, 41278744 - 41278801
Alignment:
Q  118 caataaaagagttagtattaaagaaaatgtttaaaagagagtgttactaacattcctc 175  Q
    |||||||||||| ||||| |||||||||| |||||||| |||| |  |||||||||||    
T  41278744 caataaaagagtgagtatcaaagaaaatgcttaaaagaaagtgatgataacattcctc 41278801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 129
Target Start/End: Complemental strand, 48339454 - 48339381
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagt 129  Q
    ||||||| || ||||||||||||||| | |||| ||||| |||||  || |||| |||||| ||||||||||||    
T  48339454 tgtatgttccaccactttgtgtgggttcaattttcaaagcgtagacccataatgctttaaaccaataaaagagt 48339381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 129
Target Start/End: Complemental strand, 50481683 - 50481586
Alignment:
Q  32 cactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagt 129  Q
    ||||||| ||||||||| |||    ||||||| | ||||||||| ||| | |||||| |||||||||||  |||||| ||||||| |||||| |||||    
T  50481683 cactcttttattggatgaaatcaaagtatgtctcaccactttgtatggtttctattttcaaagtgtagacacacaatcatttaaaccaataagagagt 50481586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 123
Target Start/End: Original strand, 4138958 - 4138998
Alignment:
Q  83 ctatttccaaagtgtagattcacaatgatttaaatcaataa 123  Q
    |||||||||||||||||| || |||| ||||||||||||||    
T  4138958 ctatttccaaagtgtagactcgcaataatttaaatcaataa 4138998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 22592346 - 22592406
Alignment:
Q  32 cactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaa 92  Q
    ||||||| ||||||||| ||||  ||| |||||| ||||||||||| ||| ||||||||||    
T  22592346 cactcttttattggatgaaataaatgtttgtcccaccactttgtgtaggttctatttccaa 22592406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 129
Target Start/End: Complemental strand, 31250968 - 31250924
Alignment:
Q  85 atttccaaagtgtagattcacaatgatttaaatcaataaaagagt 129  Q
    |||| |||| ||||||  |||||||||||||||||||||||||||    
T  31250968 attttcaaaatgtagacccacaatgatttaaatcaataaaagagt 31250924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 148
Target Start/End: Original strand, 48796378 - 48796434
Alignment:
Q  92 aagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtt 148  Q
    ||||||||| ||| ||||||||||| |||||||||| | | ||||||| ||||||||    
T  48796378 aagtgtagactcaaaatgatttaaaccaataaaagaatgattattaaataaaatgtt 48796434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 23 - 138
Target Start/End: Original strand, 33008137 - 33008252
Alignment:
Q  23 tctagtacccactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaata 122  Q
    ||||| || ||||||| ||||||||| |||   |||||||||| ||||||||||||||| |||||||||| |||||||  |||||||||||||| |||||    
T  33008137 tctagcactcactcttttattggatgaaatcattgtatgtcccaccactttgtgtgggttctatttccaatgtgtagacccacaatgatttaaaccaata 33008236  T
Q  123 aaagagttagtattaa 138  Q
    ||||||  ||||||||    
T  33008237 aaagagagagtattaa 33008252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 23 - 162
Target Start/End: Complemental strand, 48374586 - 48374447
Alignment:
Q  23 tctagtacccactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaata 122  Q
    |||||||| ||||||| ||||| ||||||| | || ||||||| ||||||| | ||||| |||||||||||||||| | ||||||| ||||||| ||| |    
T  48374586 tctagtactcactcttttattgaatggaattcatgcatgtcccaccactttctatgggttctatttccaaagtgtatactcacaataatttaaaccaaca 48374487  T
Q  123 aaagagttagtattaaagaaaatgtttaaaagagagtgtt 162  Q
    | ||||| ||||||| ||| | |||| |||||||||||||    
T  48374486 agagagtgagtattagagagagtgttcaaaagagagtgtt 48374447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 56 - 171
Target Start/End: Original strand, 6442231 - 6442346
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 155  Q
    ||||||| || ||| |||||| || | | |||| |||||||||||  |||||||||||||| |||||||||||| ||||||||||| | |||| ||||||    
T  6442231 tgtatgttccaccattttgtggggattcaattttcaaagtgtagacccacaatgatttaaaccaataaaagagtgagtattaaagatagtgttcaaaaga 6442330  T
Q  156 gagtgttactaacatt 171  Q
     |||||| ||||||||    
T  6442331 aagtgttgctaacatt 6442346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 162
Target Start/End: Original strand, 22189972 - 22190111
Alignment:
Q  23 tctagtacccactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaata 122  Q
    ||||| || ||||||| ||||||||| |||   |||||| ||| ||||||||||||||| | |||| |||||||||||  | |||||||||||| |||||    
T  22189972 tctagcactcactcttttattggatgaaatcaatgtatggcccaccactttgtgtgggttcaattttcaaagtgtagacccgcaatgatttaaaccaata 22190071  T
Q  123 aaagagttagtattaaagaaaatgtttaaaagagagtgtt 162  Q
    || |||| ||||||| |||   |||| |||||||||||||    
T  22190072 aacgagtgagtattagagagggtgttcaaaagagagtgtt 22190111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 56 - 175
Target Start/End: Original strand, 27888348 - 27888467
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 155  Q
    |||||||||| ||||||||||||||| | ||||  ||||||||||  |||||||||||||| |||||| ||||| ||| ||| ||| | || | ||||||    
T  27888348 tgtatgtcccaccactttgtgtgggttcaatttttaaagtgtagacccacaatgatttaaaccaataagagagtgagtgttagagagagtgctcaaaaga 27888447  T
Q  156 gagtgttactaacattcctc 175  Q
    ||||||| ||| ||||||||    
T  27888448 gagtgttgctagcattcctc 27888467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 162
Target Start/End: Complemental strand, 44350916 - 44350810
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 155  Q
    |||||||| || |||||||| | ||| | |||| ||||||||||| ||||||||||||||| ||| |||||||| ||||||| |||   |||| ||||||    
T  44350916 tgtatgtctcgtcactttgtttaggttcaattttcaaagtgtagactcacaatgatttaaaccaacaaaagagtgagtattagagatggtgttcaaaaga 44350817  T
Q  156 gagtgtt 162  Q
    |||||||    
T  44350816 gagtgtt 44350810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 84 - 148
Target Start/End: Original strand, 1316367 - 1316431
Alignment:
Q  84 tatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtt 148  Q
    |||||| |||||||| ||| ||||||||||||| |||||||||||| ||||||| ||||||||||    
T  1316367 tatttctaaagtgtacatttacaatgatttaaaccaataaaagagtgagtattagagaaaatgtt 1316431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 129
Target Start/End: Complemental strand, 31502602 - 31502505
Alignment:
Q  32 cactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagt 129  Q
    ||||||| ||||||||| |||    ||||||||| ||| |||||||| || | |||| ||||||||||| ||||||||||||||| |||||| |||||    
T  31502602 cactcttttattggatgaaatcaaggtatgtcccaccattttgtgtgcgttcaattttcaaagtgtagactcacaatgatttaaaccaataagagagt 31502505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 23 - 162
Target Start/End: Original strand, 11824104 - 11824241
Alignment:
Q  23 tctagtacccactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaata 122  Q
    ||||| || ||||||| ||||||||| |||   |||||||||| ||| ||||||| | | | |||| ||||||||| |  ||||||||||||||||||||    
T  11824104 tctagcactcactcttttattggatgaaatcaatgtatgtcccaccattttgtgtagcttcaattttcaaagtgtaaacccacaatgatttaaatcaata 11824203  T
Q  123 aaagagttagtattaaagaaaatgtttaaaagagagtgtt 162  Q
    | | ||| ||||||  ||| | |||| |||||||||||||    
T  11824204 agaaagtgagtatt--agagagtgttcaaaagagagtgtt 11824241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 67 - 171
Target Start/End: Complemental strand, 25686938 - 25686834
Alignment:
Q  67 ccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgttacta 166  Q
    ||||||| | ||||| | |||| |||||||||||  |||||||||||||| |||||| | | | ||||||| | | |||||| ||||||||||||| |||    
T  25686938 ccactttttatgggttcaattttcaaagtgtagacccacaatgatttaaaccaataagataatgagtattagaaagaatgttcaaaagagagtgttgcta 25686839  T
Q  167 acatt 171  Q
    |||||    
T  25686838 acatt 25686834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 171
Target Start/End: Original strand, 46517357 - 46517472
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 155  Q
    ||||| |||| ||| | |||| |||| | |||| ||||||||||| ||||||||||||||| |||||| ||| | ||||||| |||   |||| ||||||    
T  46517357 tgtatatcccaccattctgtgggggttcaattttcaaagtgtagactcacaatgatttaaaccaataagagaatgagtattagagaggctgttcaaaaga 46517456  T
Q  156 gagtgttactaacatt 171  Q
    ||||||| ||| ||||    
T  46517457 gagtgttgctagcatt 46517472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 162
Target Start/End: Original strand, 11692221 - 11692351
Alignment:
Q  32 cactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagtta 131  Q
    ||||||| ||||||||| |||   |||||||||  ||||||||||| ||| | |||| ||||||||| | ||||| |||||||||  ||||  ||||| |    
T  11692221 cactcttttattggatgaaatcaatgtatgtcctaccactttgtgtaggttcaattttcaaagtgtaaactcacagtgatttaaactaatatgagagtga 11692320  T
Q  132 gtattaaagaaaatgtttaaaagagagtgtt 162  Q
    |||||| |||   |||| |||||||||||||    
T  11692321 gtattagagagtgtgttcaaaagagagtgtt 11692351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 137
Target Start/End: Complemental strand, 12263575 - 12263469
Alignment:
Q  31 ccactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagtt 130  Q
    |||||||| ||| |||||||||   ||||||||||  |||||||||| ||  | |||| |||||||||||  |||||||||||||| |||||| | |||     
T  12263575 ccactcttttatcggatggaatcaatgtatgtcccatcactttgtgtaggatcaattttcaaagtgtagacccacaatgatttaaaccaataagatagtg 12263476  T
Q  131 agtatta 137  Q
    |||||||    
T  12263475 agtatta 12263469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 90 - 171
Target Start/End: Original strand, 27949373 - 27949454
Alignment:
Q  90 caaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgttactaacatt 171  Q
    |||||||||||  ||||||||||||||  ||||| ||||| ||||||| ||| | |||| ||||||||||||| ||| ||||    
T  27949373 caaagtgtagacccacaatgatttaaactaataagagagtgagtattagagagagtgttcaaaagagagtgttgctagcatt 27949454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 99
Target Start/End: Complemental strand, 17354662 - 17354598
Alignment:
Q  35 tcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtag 99  Q
    |||| ||||||||| |||   |||||||||| ||||||| ||||||| |||||||||||||||||    
T  17354662 tcttttattggatgaaatcaatgtatgtcccaccactttatgtgggttctatttccaaagtgtag 17354598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 135
Target Start/End: Complemental strand, 19422921 - 19422869
Alignment:
Q  83 ctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtat 135  Q
    |||||| | |||||||||| |||||||||||||| |||||||||||| |||||    
T  19422921 ctattttcgaagtgtagatccacaatgatttaaaccaataaaagagtgagtat 19422869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 171
Target Start/End: Complemental strand, 25428593 - 25428477
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattc-acaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaag 154  Q
    |||||||||| ||||||| |||||||   ||||||||||||||||| | ||| |||||| |  |||||||||||| |||  |||||| | || | |||||    
T  25428593 tgtatgtcccaccactttatgtgggttacatttccaaagtgtagatcctacattgattttatccaataaaagagtgagtgctaaagagagtgctcaaaag 25428494  T
Q  155 agagtgttactaacatt 171  Q
    |||||||| ||| ||||    
T  25428493 agagtgttgctatcatt 25428477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 67 - 162
Target Start/End: Original strand, 39254160 - 39254255
Alignment:
Q  67 ccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgtt 162  Q
    ||||||||||| ||| | ||||  ||| ||||||  |||||| |||||||||||||| ||||| ||| ||||||| | |||| |||||||| ||||    
T  39254160 ccactttgtgttggttcaatttttaaaatgtagacccacaataatttaaatcaataagagagtgagtgttaaagagagtgttcaaaagagaatgtt 39254255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 101
Target Start/End: Complemental strand, 19494486 - 19494408
Alignment:
Q  23 tctagtacccactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagat 101  Q
    |||||||| ||||||| |||||| || |||   |||||||||| ||||||| ||||||| | |||| ||||||||||||    
T  19494486 tctagtactcactcttttattgggtgaaatcaatgtatgtcccaccactttatgtgggttccattttcaaagtgtagat 19494408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 162
Target Start/End: Original strand, 32205118 - 32205248
Alignment:
Q  32 cactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagtta 131  Q
    ||||||| ||||||||| |||   |||||||||  ||| ||||||||||| | ||||  ||||| ||| |  |||||||||||||  ||||| ||||| |    
T  32205118 cactcttttattggatgaaatcaatgtatgtcctaccattttgtgtgggttcaatttttaaagtataggtctacaatgatttaaactaataagagagtga 32205217  T
Q  132 gtattaaagaaaatgtttaaaagagagtgtt 162  Q
    |||||| |||  ||||| |||||| ||||||    
T  32205218 gtattagagaggatgttcaaaagaaagtgtt 32205248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 171
Target Start/End: Original strand, 2911854 - 2911943
Alignment:
Q  83 ctatttccaaagtgt-agattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgttactaacatt 171  Q
    ||||||| ||||||| |||| ||| |||||||||  |||||||| ||| ||||||  ||| | |||| |||||| |||||||||||||||    
T  2911854 ctatttctaaagtgtgagatccaccatgatttaagccaataaaaaagtgagtattggagagagtgttgaaaagaaagtgttactaacatt 2911943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 129
Target Start/End: Complemental strand, 23564149 - 23564076
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagt 129  Q
    |||||||| | ||||||||| || || |||||| |||||||||||| |||  | ||||||| ||||||||||||    
T  23564149 tgtatgtcgcaccactttgtatgagttctattttcaaagtgtagatccactgtaatttaaaccaataaaagagt 23564076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 162
Target Start/End: Original strand, 32605410 - 32605503
Alignment:
Q  69 actttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgtt 162  Q
    ||||||||||| | | ||||  |||||||||  |||||||||||||||| ||||| || || | ||||||||||  |||| |||||||| ||||    
T  32605410 actttgtgtggattcaatttttaaagtgtaggctcacaatgatttaaattaataagagggtaaatattaaagaagttgttcaaaagagaatgtt 32605503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 7459450 - 7459494
Alignment:
Q  97 tagattcacaatgatttaaatcaataaaagagttagtattaaaga 141  Q
    ||||| |||||| ||||||| |||||||||||| |||||||||||    
T  7459450 tagatccacaataatttaaaccaataaaagagtgagtattaaaga 7459494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 56 - 175
Target Start/End: Original strand, 44274300 - 44274419
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 155  Q
    |||||||||| ||||||||||||||| | | || |||||||||||| |||||||||||||| |||||| ||||| ||| ||| ||| ||| |||||||||    
T  44274300 tgtatgtcccaccactttgtgtgggttcaactttcaaagtgtagatccacaatgatttaaaccaataacagagtgagtgttagagagaatatttaaaaga 44274399  T
Q  156 gagtgttactaacattcctc 175  Q
    |||||||  || ||||||||    
T  44274400 gagtgttgttagcattcctc 44274419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 56 - 162
Target Start/End: Original strand, 12989257 - 12989363
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 155  Q
    |||||||||| ||||||||| ||| | |||||||| |||||||||  |||||||||||||| |||||| ||||| ||||||| ||| | |||| ||||||    
T  12989257 tgtatgtcccaccactttgtatggattctatttccgaagtgtagacccacaatgatttaaaccaataagagagtgagtattagagagagtgttcaaaaga 12989356  T
Q  156 gagtgtt 162  Q
    |||||||    
T  12989357 gagtgtt 12989363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 40 - 162
Target Start/End: Complemental strand, 34142269 - 34142147
Alignment:
Q  40 tattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaa 139  Q
    ||||||||| ||| | |||||||| | | ||||||||||||| | |||| ||||||||||| |||||||| |||||| |||||| ||||| | |||||||    
T  34142269 tattggatgaaattcatgtatgtctcactactttgtgtgggttcaattttcaaagtgtagagtcacaatggtttaaaccaataagagagtgaatattaaa 34142170  T
Q  140 gaaaatgtttaaaagagagtgtt 162  Q
    |||||| ||  ||||||||||||    
T  34142169 gaaaatattctaaagagagtgtt 34142147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 56 - 137
Target Start/End: Original strand, 10981584 - 10981665
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtatta 137  Q
    |||||||||| ||||||||||||||| |||||||||| |||||||  |||||||||||||| |||||| ||||| |||||||    
T  10981584 tgtatgtcccaccactttgtgtgggttctatttccaatgtgtagacccacaatgatttaaaccaataagagagtgagtatta 10981665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 40 - 156
Target Start/End: Complemental strand, 25730569 - 25730453
Alignment:
Q  40 tattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaa 139  Q
    ||||||||||||||| |||||||| | |||  || ||||||| ||||||  || ||||| | ||||| ||||||||| |||||||||||| | |||||||    
T  25730569 tattggatggaatacatgtatgtctcaccatattatgtgggttctatttttaacgtgtaaactcacagtgatttaaaccaataaaagagtgaatattaaa 25730470  T
Q  140 gaaaatgtttaaaagag 156  Q
     ||||||||||||||||    
T  25730469 aaaaatgtttaaaagag 25730453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 75 - 162
Target Start/End: Complemental strand, 25238372 - 25238285
Alignment:
Q  75 tgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgtt 162  Q
    ||||||| |||||| |||||||||||| |||||||||||||| |||||||| ||| |||  || ||||| ||||||||||||||||||    
T  25238372 tgtgggttctattttcaaagtgtagatccacaatgatttaaaccaataaaaaagtgagtgctagagaaagtgtttaaaagagagtgtt 25238285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 56 - 171
Target Start/End: Complemental strand, 26767875 - 26767760
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 155  Q
    |||||||||| |||||||||| |||| | |||| |||| |||||| ||||||||||||||| |||||||||||| ||||||| | | | |||| ||||||    
T  26767875 tgtatgtcccaccactttgtgagggttcaattttcaaattgtagactcacaatgatttaaaccaataaaagagtgagtattagatagagtgttcaaaaga 26767776  T
Q  156 gagtgttactaacatt 171  Q
     |||||| ||| ||||    
T  26767775 aagtgttgctagcatt 26767760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 32 - 129
Target Start/End: Original strand, 9470123 - 9470220
Alignment:
Q  32 cactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagt 129  Q
    ||||||| ||||||||| |||   |||||||||| ||||||||| ||||| | |||| |||||||||||  |||||||||||||| |||||| |||||    
T  9470123 cactcttttattggatgaaatcaatgtatgtcccaccactttgtttgggttcaattttcaaagtgtagacccacaatgatttaaaccaataagagagt 9470220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 7919382 - 7919311
Alignment:
Q  58 tatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagt 129  Q
    |||||||| ||||||||||||| | | |||| |||||||||||| |||||||||||||| |||||| |||||    
T  7919382 tatgtcccaccactttgtgtggattcaattttcaaagtgtagatccacaatgatttaaaccaataagagagt 7919311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 159
Target Start/End: Original strand, 38464241 - 38464332
Alignment:
Q  68 cactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagt 159  Q
    ||||||| |||||| | |||| |||||||||||  |||||||||||||| |||||| ||||| ||||||| ||| | |||| ||||||||||    
T  38464241 cactttgcgtgggttcaattttcaaagtgtagacccacaatgatttaaaccaataagagagtaagtattagagagagtgttcaaaagagagt 38464332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 177
Target Start/End: Original strand, 42182922 - 42183077
Alignment:
Q  23 tctagtacccactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattc-acaatgatttaaatcaat 121  Q
    ||||| || ||||||| |||||| || |||   |||||||||| ||||||| ||||||| | ||||||||||||||| | | ||| |||||| |  ||||    
T  42182922 tctagcactcactcttttattgggtgaaatcaatgtatgtcccaccactttatgtgggttccatttccaaagtgtaggtcctacattgatttcacccaat 42183021  T
Q  122 aaaagagttagtattaaagaaaatgtttaaaagagagtgttactaacattcctcat 177  Q
    ||||||||||||     ||| | |||| ||||||||||||||||| ||||||||||    
T  42183022 aaaagagttagtgccggagagagtgttcaaaagagagtgttactagcattcctcat 42183077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 14489618 - 14489550
Alignment:
Q  91 aaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagt 159  Q
    ||||||||||| |||||| ||||||| |||||||||| | ||||||| ||||||| || ||||||||||    
T  14489618 aaagtgtagatccacaataatttaaaccaataaaagaatgagtattagagaaaattttcaaaagagagt 14489550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 85 - 180
Target Start/End: Original strand, 19953490 - 19953586
Alignment:
Q  85 atttccaaagtgt-agattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgttactaacattcctcatgat 180  Q
    ||||||||||||| ||| |||| |||||||||  |||||||| ||| ||||||  |||||||||| ||||||||||||| ||| |||| ||| ||||    
T  19953490 atttccaaagtgtgagactcactatgatttaatccaataaaaaagtgagtattggagaaaatgttaaaaagagagtgttgctagcattactcttgat 19953586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 162
Target Start/End: Complemental strand, 6980223 - 6980128
Alignment:
Q  67 ccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgtt 162  Q
    |||||||||||| || | |||| |||||| ||||  ||||||||||| ||  ||||| ||||| ||||||| ||||| |||| |||||||||||||    
T  6980223 ccactttgtgtgagttcaattttcaaagtatagacccacaatgatttcaactaataagagagtgagtattagagaaagtgttcaaaagagagtgtt 6980128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 162
Target Start/End: Original strand, 11539503 - 11539598
Alignment:
Q  68 cactttgtgtgggtgctatttccaaagtgtagattcacaa-tgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgtt 162  Q
    ||||||||||| || |||||| |||||||||||| || || ||||||||| |||||| ||||| ||||||| ||| | ||| ||||||||| ||||    
T  11539503 cactttgtgtgagttctattttcaaagtgtagatccagaattgatttaaaccaataagagagtgagtattagagagagtgtgtaaaagagaatgtt 11539598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 157
Target Start/End: Complemental strand, 30718426 - 30718340
Alignment:
Q  71 tttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagaga 157  Q
    ||||||||| |  ||||| ||||||||||| ||||||||||||||| |||||||| ||| | ||||| ||| | ||| |||||||||    
T  30718426 tttgtgtggattgtattttcaaagtgtagactcacaatgatttaaaccaataaaaaagtgaatattagagagagtgtctaaaagaga 30718340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 162
Target Start/End: Original strand, 45554661 - 45554731
Alignment:
Q  92 aagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgtt 162  Q
    |||||||||  |||||||||||||| |||||| | ||| ||||||| ||| |||||| |||||||||||||    
T  45554661 aagtgtagacccacaatgatttaaaccaataagaaagtgagtattagagagaatgttcaaaagagagtgtt 45554731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 125
Target Start/End: Complemental strand, 37652359 - 37652290
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaa 125  Q
    ||||||| || || ||||||||  || | |||||||| ||||||||||||||||||||||| ||||||||    
T  37652359 tgtatgttccacccctttgtgtatgttcaatttccaacgtgtagattcacaatgatttaaaccaataaaa 37652290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 175
Target Start/End: Original strand, 15508980 - 15509100
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattc-acaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaag 154  Q
    |||||||||| ||| ||| ||||||| | ||||||||||||||||| | ||| |||||| |  |||| ||||||| |||  || ||| | || | |||||    
T  15508980 tgtatgtcccaccattttttgtgggttccatttccaaagtgtagatcctacattgatttcacccaattaaagagtaagtgatatagagagtgctaaaaag 15509079  T
Q  155 agagtgttactaacattcctc 175  Q
    |||||||| ||||||||||||    
T  15509080 agagtgttgctaacattcctc 15509100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 162
Target Start/End: Original strand, 2122888 - 2122967
Alignment:
Q  83 ctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgtt 162  Q
    ||||||| | ||||||  ||||| ||||||||||||||||| ||||| ||||  | |||||||||| |||| ||||||||    
T  2122888 ctatttctagagtgtaagttcactatgatttaaatcaataagagagtgagtaccagagaaaatgttcaaaaaagagtgtt 2122967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 162
Target Start/End: Complemental strand, 4552926 - 4552848
Alignment:
Q  84 tatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgtt 162  Q
    ||||| ||| |||||||  |||||||||||||| |||||| ||||| ||||| | | |||||||| ||||| |||||||    
T  4552926 tattttcaatgtgtagacccacaatgatttaaaccaataagagagtgagtatcagaaaaaatgttcaaaagtgagtgtt 4552848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 172
Target Start/End: Complemental strand, 28898184 - 28898034
Alignment:
Q  23 tctagtacccactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattc-acaatgatttaaatcaat 121  Q
    ||||| || ||||||| |||||| || |||   |||||||||| ||||||| |||||||   ||||||||||||||||| | ||| |||||| |  ||||    
T  28898184 tctagcactcactcttttattgggtgaaatcaatgtatgtcccaccactttatgtgggtttcatttccaaagtgtagatcctacattgatttcatccaat 28898085  T
Q  122 aaaagagttagtattaaagaaaatgtttaaaagagagtgttactaacattc 172  Q
    |||||||| |||  |||||| | |  | ||||||||||||| ||| |||||    
T  28898084 aaaagagtgagtgctaaagagagtactcaaaagagagtgttgctagcattc 28898034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 141
Target Start/End: Complemental strand, 12098980 - 12098895
Alignment:
Q  57 gtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaa-tgatttaaatcaataaaagagttagtattaaaga 141  Q
    ||||||| ||||||||||| || || | |||| ||||||||| | |||||| |||||||||  ||||| ||||| |||||||||||    
T  12098980 gtatgtctcgccactttgtatgagttcaattttcaaagtgtaaactcacaaatgatttaaactaataagagagtgagtattaaaga 12098895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 177
Target Start/End: Complemental strand, 472264 - 472156
Alignment:
Q  69 actttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgttactaac 168  Q
    |||||||||| || | |||| |||| | || || |||||||||||||| |||||| ||||  ||||||||||| | || | |||||| | |||| |||||    
T  472264 actttgtgtgagttcaattttcaaaatatatatccacaatgatttaaaccaataagagagcgagtattaaagagagtgctcaaaagaaattgtttctaac 472165  T
Q  169 attcctcat 177  Q
    ||| |||||    
T  472164 attactcat 472156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 176
Target Start/End: Complemental strand, 15508978 - 15508910
Alignment:
Q  108 tgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgttactaacattcctca 176  Q
    |||||| | ||||||||||||| ||| ||| | | | |||| ||||||||||||| |||||||||||||    
T  15508978 tgatttcactcaataaaagagtgagtgttagaaagagtgttcaaaagagagtgttgctaacattcctca 15508910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 15884498 - 15884562
Alignment:
Q  59 atgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataa 123  Q
    ||||||| ||||||||||||||| | |||| |||| ||||||  |||||| ||||||| ||||||    
T  15884498 atgtcccaccactttgtgtgggttcaattttcaaaatgtagacccacaattatttaaaccaataa 15884562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 137
Target Start/End: Complemental strand, 27494516 - 27494484
Alignment:
Q  105 caatgatttaaatcaataaaagagttagtatta 137  Q
    ||||||||||||||||||||||||| |||||||    
T  27494516 caatgatttaaatcaataaaagagtgagtatta 27494484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 171
Target Start/End: Complemental strand, 32856238 - 32856134
Alignment:
Q  67 ccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgttacta 166  Q
    |||||||||||||||   |||| |||||||||||| || | ||||||||| |||||| ||| | ||||||| | |   |||| |||| |||||||| |||    
T  32856238 ccactttgtgtgggttgaattttcaaagtgtagatccatagtgatttaaaccaataagagattgagtattagaaagggtgttcaaaatagagtgttgcta 32856139  T
Q  167 acatt 171  Q
    |||||    
T  32856138 acatt 32856134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 171
Target Start/End: Complemental strand, 35316468 - 35316400
Alignment:
Q  103 cacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgttactaacatt 171  Q
    ||||||||||||||||||||| ||||| ||||| | | | | || | ||||||||||||||||| ||||    
T  35316468 cacaatgatttaaatcaataagagagtgagtatcataaagagtgctcaaaagagagtgttactagcatt 35316400  T

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Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 36471923 - 36471871
Alignment:
Q  85 atttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtatta 137  Q
    |||| |||| |||| | ||||||||||||||| |||||||||||| |||||||    
T  36471923 attttcaaaatgtaaactcacaatgatttaaaccaataaaagagtgagtatta 36471871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 23 - 162
Target Start/End: Original strand, 15928588 - 15928725
Alignment:
Q  23 tctagtacccactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaata 122  Q
    ||||| |||||||||| |||| |||||||| | |||||||| | ||| |||||||| || |||||| ||| ||||||| | ||| ||||||||| |||||    
T  15928588 tctagcacccactcttttatttgatggaattcatgtatgtctcaccattttgtgtgagttctattttcaaggtgtagacttacagtgatttaaaccaata 15928687  T
Q  123 aaagagttagtattaaagaaaatgtttaaaagagagtgtt 162  Q
    ||||||| ||||||  ||| | |||| |||||||||||||    
T  15928688 aaagagtgagtatt--agagagtgttcaaaagagagtgtt 15928725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 96 - 175
Target Start/End: Complemental strand, 16948603 - 16948524
Alignment:
Q  96 gtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgttactaacattcctc 175  Q
    |||||| ||||||||||||||||||||| ||||| ||||||| |||||||||| || |||||||||| ||| ||||||||    
T  16948603 gtagatccacaatgatttaaatcaataagagagtgagtattagagaaaatgttcaacagagagtgttgctagcattcctc 16948524  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 56 - 175
Target Start/End: Complemental strand, 30679025 - 30678906
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 155  Q
    |||||||||| ||||||||||||||| | |||| ||||||||||| ||||||||||||||  |||||| ||||| ||| ||| ||| | || | |||| |    
T  30679025 tgtatgtcccaccactttgtgtgggttcaattttcaaagtgtagactcacaatgatttaagccaataagagagtgagtgttagagagagtgctcaaaaaa 30678926  T
Q  156 gagtgttactaacattcctc 175  Q
    ||||||| ||| ||||||||    
T  30678925 gagtgttgctagcattcctc 30678906  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 177
Target Start/End: Original strand, 8899081 - 8899201
Alignment:
Q  57 gtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagag 156  Q
    ||||||||| || |||||||||||| | |||| |||||||||| | |||||| ||||||| |||||| ||||| ||||||| ||| | |||| |||||||    
T  8899081 gtatgtcccacccctttgtgtgggttcaattttcaaagtgtaggtccacaataatttaaaccaataagagagtgagtattagagagagtgttcaaaagag 8899180  T
Q  157 agtgttactaacattcctcat 177  Q
    | |||| ||| |||| |||||    
T  8899181 attgttgctagcattactcat 8899201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 56 - 160
Target Start/End: Original strand, 22540434 - 22540534
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 155  Q
    |||||||||| ||||||| || | || ||||||||||||||||||| | |||||||||||| |||||    ||||||||||||||| | |||| ||||||    
T  22540434 tgtatgtcccaccactttatgcgagttctatttccaaagtgtagatccgcaatgatttaaaccaata----agttagtattaaagagagtgttcaaaaga 22540529  T
Q  156 gagtg 160  Q
    |||||    
T  22540530 gagtg 22540534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 23 - 162
Target Start/End: Complemental strand, 26980409 - 26980270
Alignment:
Q  23 tctagtacccactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaata 122  Q
    |||| ||| ||||||  ||||||||| |||   |||||||||| ||| |||||||| || | |||| |||| | || || ||||||||||||||||||||    
T  26980409 tctaatactcactctattattggatgaaatcaatgtatgtcccaccattttgtgtgagttcaattttcaaaatatacatccacaatgatttaaatcaata 26980310  T
Q  123 aaagagttagtattaaagaaaatgtttaaaagagagtgtt 162  Q
    | ||||| ||||||| ||| | |||| |||||||||||||    
T  26980309 agagagtgagtattatagagagtgttgaaaagagagtgtt 26980270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 58 - 175
Target Start/End: Original strand, 25543408 - 25543524
Alignment:
Q  58 tatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagaga 157  Q
    |||||||| ||||||||||| |||  |||| |||| ||| ||  ||||||||||||||| |||||| | ||| ||||||| ||| | |||| ||||||||    
T  25543408 tatgtcccaccactttgtgtaggta-tattcccaatgtgcagcctcacaatgatttaaaccaataagatagtgagtattagagagagtgttcaaaagaga 25543506  T
Q  158 gtgttactaacattcctc 175  Q
    |||||||||||| |||||    
T  25543507 gtgttactaacactcctc 25543524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 84 - 141
Target Start/End: Complemental strand, 37553035 - 37552978
Alignment:
Q  84 tatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaaga 141  Q
    ||||| |||||||||||| ||||||||||||||||||||| ||||| |||||||||||    
T  37553035 tattttcaaagtgtagatccacaatgatttaaatcaataagagagtgagtattaaaga 37552978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 166
Target Start/End: Original strand, 2225257 - 2225400
Alignment:
Q  23 tctagtacccactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaata 122  Q
    ||||| |||||||||| ||||||||| |||   |||||||||| ||||||||||||||| |  ||| |||||||||||   ||| ||||||||| |||||    
T  2225257 tctagcacccactcttttattggatgaaatcaatgtatgtcccaccactttgtgtgggttcggtttacaaagtgtagaccgacagtgatttaaaccaata 2225356  T
Q  123 aaagagttagtattaaagaaaatgtttaaaagagagtgttacta 166  Q
    | | ||| ||||| | | |   |||| |||||||||||||||||    
T  2225357 agaaagtgagtatcacaaagcgtgttcaaaagagagtgttacta 2225400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 85 - 159
Target Start/End: Original strand, 15906505 - 15906579
Alignment:
Q  85 atttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagt 159  Q
    |||| |||| |||||||| ||||||||||||||||||||| || | ||||||| ||| |||||| ||||||||||    
T  15906505 atttacaaaatgtagatttacaatgatttaaatcaataaacgaatgagtattagagataatgttaaaaagagagt 15906579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 67 - 157
Target Start/End: Complemental strand, 41948249 - 41948159
Alignment:
Q  67 ccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagaga 157  Q
    ||||||||||| ||| | |||| ||||||||| || ||||||||||||||||||||| ||||| ||| ||| ||| | |||| ||||||||    
T  41948249 ccactttgtgttggttcaattttcaaagtgtaaatccacaatgatttaaatcaataagagagtgagtgttagagagagtgttcaaaagaga 41948159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 56 - 175
Target Start/End: Complemental strand, 14094115 - 14093995
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattc-acaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaag 154  Q
    |||||||||| ||||||| ||||||| | ||||||||||||||| | | ||| |||||| | ||||| ||| ||| ||| ||| | | | |||| |||||    
T  14094115 tgtatgtcccaccactttatgtgggttccatttccaaagtgtaggtcctacattgatttcactcaatcaaaaagtgagtgttacaaagagtgttcaaaag 14094016  T
Q  155 agagtgttactaacattcctc 175  Q
    |||||||| ||||||||||||    
T  14094015 agagtgttgctaacattcctc 14093995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 71 - 162
Target Start/End: Complemental strand, 8741322 - 8741231
Alignment:
Q  71 tttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgtt 162  Q
    ||||||||||| | |||| |||||| || |  ||||||||||||||  ||||| ||||| ||||||| ||||| |||| |||||||||||||    
T  8741322 tttgtgtgggttcaattttcaaagtataaacacacaatgatttaaactaataagagagtgagtattagagaaattgttcaaaagagagtgtt 8741231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 159
Target Start/End: Complemental strand, 19101715 - 19101612
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 155  Q
    |||||||||| ||||||| || | || |||||| ||||||||||||   |||||||||||| |||||| | ||| ||||||| ||| | |||| ||||||    
T  19101715 tgtatgtcccaccactttatgcgagttctattttcaaagtgtagatctgcaatgatttaaaccaataagaaagtgagtattagagagagtgttcaaaaga 19101616  T
Q  156 gagt 159  Q
    ||||    
T  19101615 gagt 19101612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 167
Target Start/End: Complemental strand, 32211898 - 32211787
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 155  Q
    |||||||||  | |||||||||| || | ||||  || |||||||  |||||||||||||| |||||| ||||| |  |||||||||| |||| ||||||    
T  32211898 tgtatgtccaactactttgtgtgagttcaatttttaaggtgtagacccacaatgatttaaaccaataagagagtgatcattaaagaaagtgttgaaaaga 32211799  T
Q  156 gagtgttactaa 167  Q
    ||||||| ||||    
T  32211798 gagtgttgctaa 32211787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 162
Target Start/End: Complemental strand, 39974279 - 39974208
Alignment:
Q  91 aaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgtt 162  Q
    |||||| ||||| ||||||||||||| |||||| ||||| ||||||| | | |||||| |||||||||||||    
T  39974279 aaagtgcagatttacaatgatttaaaccaataagagagtgagtattagaaagaatgttcaaaagagagtgtt 39974208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 128
Target Start/End: Complemental strand, 3872746 - 3872676
Alignment:
Q  58 tatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagag 128  Q
    |||||| | ||||||||||| ||| | ||||||||||||||||  |||||||||| ||| |||||||||||    
T  3872746 tatgtcacaccactttgtgtaggttcaatttccaaagtgtagacccacaatgattcaaaccaataaaagag 3872676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 159
Target Start/End: Original strand, 15523276 - 15523375
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 155  Q
    |||||||||| ||||||| || | || ||||||| ||||||||||| | |||||||||||| |||||    ||||||||||| ||| | |||| ||||||    
T  15523276 tgtatgtcccaccactttatgcgagttctatttctaaagtgtagatccgcaatgatttaaaccaata----agttagtattagagagagtgttcaaaaga 15523371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 159
Target Start/End: Original strand, 15531270 - 15531369
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 155  Q
    |||||||||| ||||||| || | || ||||||| ||||||||||| | |||||||||||| |||||    ||||||||||| ||| | |||| ||||||    
T  15531270 tgtatgtcccaccactttatgcgagttctatttctaaagtgtagatccgcaatgatttaaaccaata----agttagtattagagagagtgttcaaaaga 15531365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 171
Target Start/End: Complemental strand, 6133736 - 6133624
Alignment:
Q  58 tatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagaga 157  Q
    |||||||| |||  |||||||||| | |||| |||||| || |  |||||||||| ||| |||||| ||||| ||||||| |||  ||||| ||||||||    
T  6133736 tatgtcccaccatattgtgtgggttcaattttcaaagtctacacccacaatgatt-aaaccaataagagagtgagtattagagaggatgttcaaaagaga 6133638  T
Q  158 gtgttactaacatt 171  Q
    ||||| ||||||||    
T  6133637 gtgttgctaacatt 6133624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 177
Target Start/End: Original strand, 11987692 - 11987813
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 155  Q
    ||||||| || |||||| ||| |||| | |||| |||||||||||  |||||||||||||| || ||| |||||   ||||| | | | |||||||||||    
T  11987692 tgtatgttccaccacttagtgcgggttcaattttcaaagtgtagacccacaatgatttaaaccattaagagagtggatattagaaagagtgtttaaaaga 11987791  T
Q  156 gagtgttactaacattcctcat 177  Q
    ||||||| ||| |||| |||||    
T  11987792 gagtgttgctagcattactcat 11987813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 158
Target Start/End: Original strand, 15468299 - 15468388
Alignment:
Q  69 actttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagag 158  Q
    ||||||||||||| | |||| || ||||||||  |||||| |||||||| ||||||||||| ||||||  ||| | |||| |||||||||    
T  15468299 actttgtgtgggttcaattttcatagtgtagacccacaataatttaaattaataaaagagtaagtatttgagatagtgttcaaaagagag 15468388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 90 - 178
Target Start/End: Original strand, 28109967 - 28110056
Alignment:
Q  90 caaagtgtagattc-acaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgttactaacattcctcatg 178  Q
    |||||||||||| | | |||||||| |  |||||||| ||| ||||||| ||||| |  ||||||||||||||| |||||||||||||||    
T  28109967 caaagtgtagatcctagaatgatttcatccaataaaaaagtgagtattagagaaagtacttaaaagagagtgttcctaacattcctcatg 28110056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 137
Target Start/End: Original strand, 41958149 - 41958230
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtatta 137  Q
    |||||||||| ||| |||||| |||| | |||| |||||||||||  |||| ||||||||| |||||| ||||| |||||||    
T  41958149 tgtatgtcccaccattttgtgggggttcaattttcaaagtgtagacccacagtgatttaaaccaataagagagtgagtatta 41958230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 115
Target Start/End: Original strand, 24911508 - 24911588
Alignment:
Q  35 tcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaa 115  Q
    |||| |||| |||| ||| | |||||||||| ||||||| |||||||  |||||||||||| ||||| | |||||||||||    
T  24911508 tcttttattcgatgaaatccatgtatgtcccaccactttttgtgggttttatttccaaagtatagatacgcaatgatttaa 24911588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 148
Target Start/End: Original strand, 33193116 - 33193208
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtt 148  Q
    ||||||| || ||| |||||| |||| | |||| |||||||||||  |||||||||||||| |||||| ||| | ||||||| ||||| ||||    
T  33193116 tgtatgtgccaccattttgtgagggttcaattttcaaagtgtagacccacaatgatttaaaccaataagagaatgagtattagagaaagtgtt 33193208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 177
Target Start/End: Complemental strand, 10659871 - 10659762
Alignment:
Q  67 ccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgttacta 166  Q
    ||||||||||| ||| | |||| |||||||||||  ||| |||||||||| |||||| |||| | |||||| ||||| |||| |||||| | |||| |||    
T  10659871 ccactttgtgtaggttcaattttcaaagtgtagacccacgatgatttaaaccaataagagag-tggtattagagaaagtgttcaaaagaaaatgttgcta 10659773  T
Q  167 acattcctcat 177  Q
     |||| |||||    
T  10659772 gcattactcat 10659762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 137
Target Start/End: Complemental strand, 12767407 - 12767361
Alignment:
Q  91 aaagtgtagattcacaatgatttaaatcaataaaagagttagtatta 137  Q
    |||||||||| ||| ||||||||||| |||||||||||| |||||||    
T  12767407 aaagtgtagactcataatgatttaaaccaataaaagagtgagtatta 12767361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 154
Target Start/End: Original strand, 33114037 - 33114135
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaag 154  Q
    |||||||||| ||| ||| ||| ||| | |||| |||||||||||| || ||||||||||| |||||||| ||| |||  || ||| | ||||||||||    
T  33114037 tgtatgtcccaccattttatgtaggttcaattttcaaagtgtagatccagaatgatttaaaccaataaaaaagtgagtcctatagagagtgtttaaaag 33114135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 137
Target Start/End: Complemental strand, 28218186 - 28218081
Alignment:
Q  32 cactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagtta 131  Q
    ||||||| ||||||||| |||   |||||||| | ||||||||||||| | | |||| |||||||||||  |||| | |||||||| ||||| | ||| |    
T  28218186 cactcttttattggatgaaatcaatgtatgtctcaccactttgtgtggattcaattttcaaagtgtagaaccacagtaatttaaattaataagatagtga 28218087  T
Q  132 gtatta 137  Q
    ||||||    
T  28218086 gtatta 28218081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 128
Target Start/End: Complemental strand, 47644396 - 47644339
Alignment:
Q  71 tttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagag 128  Q
    ||||||||||| |||||| ||| ||||| |  ||||||||||||||||||||| ||||    
T  47644396 tttgtgtgggttctattttcaatgtgtaaacccacaatgatttaaatcaataagagag 47644339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 175
Target Start/End: Original strand, 931487 - 931559
Alignment:
Q  103 cacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgttactaacattcctc 175  Q
    |||||||||||||| |||||||||||| | ||||| | ||| |||| |||  |||||||| ||| ||||||||    
T  931487 cacaatgatttaaaccaataaaagagtgaatattagaaaaagtgttaaaagaagagtgttgctagcattcctc 931559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 1093187 - 1093127
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaa 116  Q
    ||||||| || ||||||||| || ||  |||||||||||||||| | ||||||||||||||    
T  1093187 tgtatgttccaccactttgtatgagttatatttccaaagtgtagttccacaatgatttaaa 1093127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 99
Target Start/End: Original strand, 11430474 - 11430550
Alignment:
Q  23 tctagtacccactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtag 99  Q
    ||||| || ||||||| |||||| || |||   |||||||||| ||||||| ||||||| | |||||||||||||||    
T  11430474 tctagcactcactcttttattgggtgaaatcaatgtatgtcccaccactttatgtgggttccatttccaaagtgtag 11430550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 121
Target Start/End: Original strand, 49730943 - 49730995
Alignment:
Q  69 actttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaat 121  Q
    ||||||||||||| | |||| |||||||||||  |||||||||||||| ||||    
T  49730943 actttgtgtgggttcaattttcaaagtgtagacccacaatgatttaaaccaat 49730995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 32 - 137
Target Start/End: Complemental strand, 5413875 - 5413770
Alignment:
Q  32 cactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagtta 131  Q
    ||||||| ||||||||| |||   |||||||||| ||||||||||||||| | |||| |||||||||||  || ||||||||||| |||||||| ||| |    
T  5413875 cactcttttattggatgaaatcaatgtatgtcccaccactttgtgtgggttcaatttacaaagtgtagacccataatgatttaaaccaataaaaaagtga 5413776  T
Q  132 gtatta 137  Q
    ||||||    
T  5413775 gtatta 5413770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 55 - 171
Target Start/End: Complemental strand, 28611893 - 28611777
Alignment:
Q  55 gtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaag 154  Q
    |||||||||||  |||||||| || || | ||||  ||||||||||  |||||||||||||||||||||||||||| || ||| ||| | || | |||||    
T  28611893 gtgtatgtcccatcactttgtatgagttccatttttaaagtgtagacgcacaatgatttaaatcaataaaagagttggtgttagagagagtgctcaaaag 28611794  T
Q  155 agagtgttactaacatt 171  Q
    |||||||| ||| ||||    
T  28611793 agagtgttgctagcatt 28611777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 71 - 162
Target Start/End: Original strand, 4714830 - 4714921
Alignment:
Q  71 tttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgtt 162  Q
    ||||||||||| |||||| |||| ||||||| |||||||||||| | |||||||||||    ||||| ||| |||||| |||||||||||||    
T  4714830 tttgtgtgggttctattttcaaaatgtagatacacaatgatttataccaataaaagagaacatattagagagaatgttcaaaagagagtgtt 4714921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 171
Target Start/End: Complemental strand, 34384805 - 34384690
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 155  Q
    |||||||||| | | |||||||| || | |||| |||| | |||| ||||||||||||| | | |||||||||| ||||||||||| | |||| ||||||    
T  34384805 tgtatgtcccactattttgtgtgagttcaattttcaaattatagactcacaatgatttagaccgataaaagagtgagtattaaagagagtgttcaaaaga 34384706  T
Q  156 gagtgttactaacatt 171  Q
    ||||| ||||| ||||    
T  34384705 gagtgctactaccatt 34384690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 31 - 141
Target Start/End: Complemental strand, 41330532 - 41330422
Alignment:
Q  31 ccactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagtt 130  Q
    |||||||| |||| |||| |||   ||||||||||  |||||||||| ||| | |||| ||||||||||| ||||||||||||||| |||||| | |  |    
T  41330532 ccactcttttattagatgaaattaatgtatgtcccatcactttgtgtaggttcaattttcaaagtgtagactcacaatgatttaaaccaataagaaatgt 41330433  T
Q  131 agtattaaaga 141  Q
    |||||||||||    
T  41330432 agtattaaaga 41330422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 162
Target Start/End: Complemental strand, 28490835 - 28490730
Alignment:
Q  57 gtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagag 156  Q
    ||||||||| |||||||||||  || | ||||  ||||||||||  |||||| ||||||| |||||| ||||| ||||||| ||| | |||| |||||||    
T  28490835 gtatgtcccaccactttgtgtaagttcaattttgaaagtgtagacccacaataatttaaaccaataagagagtgagtattagagagagtgttcaaaagag 28490736  T
Q  157 agtgtt 162  Q
    ||||||    
T  28490735 agtgtt 28490730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 161
Target Start/End: Complemental strand, 30325988 - 30325883
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 155  Q
    |||||||| | ||||||| || | || |||| |||||||||||||| | |||||||||||| |||||| | ||| ||||||| ||| | |||| ||||||    
T  30325988 tgtatgtctcaccactttatgcgagttctatctccaaagtgtagatccgcaatgatttaaaccaataagaaagtgagtattagagagagtgttcaaaaga 30325889  T
Q  156 gagtgt 161  Q
    ||||||    
T  30325888 gagtgt 30325883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 129
Target Start/End: Original strand, 43405459 - 43405532
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagt 129  Q
    |||||||| | ||||||||| |  || ||||||||||||||||||  ||||||||||||||||||||| |||||    
T  43405459 tgtatgtctcaccactttgtatatgttctatttccaaagtgtagacccacaatgatttaaatcaataagagagt 43405532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 17434936 - 17434849
Alignment:
Q  83 ctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgttactaacatt 171  Q
    ||||||| ||||||||||  |||| ||||||||| |||||||||||| |  |||| || | ||||||||||||||||||| ||||||||    
T  17434936 ctatttctaaagtgtagacccacattgatttaaaccaataaaagagtgaacattagag-agatgtttaaaagagagtgttgctaacatt 17434849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 58 - 162
Target Start/End: Original strand, 25919279 - 25919383
Alignment:
Q  58 tatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagaga 157  Q
    |||||| | ||| ||||||||||  | |||| ||||||||||| ||||||||||||||| |||||||| | | | ||||||||||| | || ||||||||    
T  25919279 tatgtctcaccattttgtgtgggatcaattttcaaagtgtagactcacaatgatttaaaccaataaaaaaatgaatattaaagaaagtattcaaaagaga 25919378  T
Q  158 gtgtt 162  Q
     ||||    
T  25919379 atgtt 25919383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 129
Target Start/End: Complemental strand, 28090340 - 28090270
Alignment:
Q  59 atgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagt 129  Q
    ||||||| |||||||||||| || | |||| |||||| |||||  ||||||||||||| ||||||||||||    
T  28090340 atgtcccaccactttgtgtgagttcaattttcaaagtttagatcaacaatgatttaaaccaataaaagagt 28090270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 129
Target Start/End: Complemental strand, 10142090 - 10142017
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagt 129  Q
    |||||||||| ||||||||||| ||| | |||| |||||||||||   ||||| |||||||||||||| |||||    
T  10142090 tgtatgtcccaccactttgtgttggttccattttcaaagtgtagaccaacaattatttaaatcaataagagagt 10142017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 129
Target Start/End: Original strand, 34368426 - 34368499
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagt 129  Q
    ||||||| || ||||||||||||||| |  ||| |||||||||||  |||||||||||||| |||||| |||||    
T  34368426 tgtatgttccaccactttgtgtgggttcatttttcaaagtgtagacccacaatgatttaaaccaataagagagt 34368499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 162
Target Start/End: Complemental strand, 28223875 - 28223784
Alignment:
Q  71 tttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgtt 162  Q
    ||||||||||  | |||| |||||| ||||  || ||||||||||| |||||||||||| ||||||| |||  ||||| ||||||| |||||    
T  28223875 tttgtgtgggctcaattttcaaagtatagacccataatgatttaaaccaataaaagagtgagtattagagaggatgttcaaaagagggtgtt 28223784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 162
Target Start/End: Complemental strand, 1923666 - 1923560
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 155  Q
    |||||||| | |||||||||||| || | ||||  ||||||||| || ||||||||||||| |||||| | | | ||||||| |||  ||||| |||| |    
T  1923666 tgtatgtcacaccactttgtgtgagttcaatttttaaagtgtagttttacaatgatttaaaccaataagataatgagtattagagatgatgttcaaaaaa 1923567  T
Q  156 gagtgtt 162  Q
    |||||||    
T  1923566 gagtgtt 1923560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 159
Target Start/End: Complemental strand, 13381881 - 13381791
Alignment:
Q  69 actttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagt 159  Q
    |||||| |||||| |||||||||||  ||| |   | |||||||||||||||||||| ||| | ||||||| | | |||||||||||||||    
T  13381881 actttgagtgggttctatttccaaaacgtaaacctataatgatttaaatcaataaaaaagtgaatattaaaaatattgtttaaaagagagt 13381791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 129
Target Start/End: Complemental strand, 27592566 - 27592493
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagt 129  Q
    |||||||| | ||||||| || | || |||||||||||||||||||   |||||||||||| |||||| |||||    
T  27592566 tgtatgtctcaccactttatgcgagttctatttccaaagtgtagatctgcaatgatttaaaccaataagagagt 27592493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 36337975 - 36337935
Alignment:
Q  85 atttccaaagtgtagattcacaatgatttaaatcaataaaa 125  Q
    ||||||||||||||||  |||||||||||||| ||||||||    
T  36337975 atttccaaagtgtagacccacaatgatttaaaccaataaaa 36337935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 92 - 162
Target Start/End: Complemental strand, 8489 - 8419
Alignment:
Q  92 aagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgtt 162  Q
    ||||||||| ||| ||||||||||| |||||||||| ||||||||||||| | | || |||||||||||||    
T  8489 aagtgtagactcataatgatttaaaccaataaaagaattagtattaaagagagtattcaaaagagagtgtt 8419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 129
Target Start/End: Complemental strand, 26976 - 26903
Alignment:
Q  56 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagt 129  Q
    ||||||| || ||||||||||||||| | |||| ||||| |||||  || |||| |||||| ||||||||||||    
T  26976 tgtatgttccaccactttgtgtgggttcaattttcaaagcgtagacccataatgctttaaaccaataaaagagt 26903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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