View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16678_low_22 (Length: 357)

Name: NF16678_low_22
Description: NF16678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16678_low_22
NF16678_low_22
[»] chr3 (5 HSPs)
chr3 (21-272)||(32249243-32249497)
chr3 (271-341)||(32193313-32193383)
chr3 (271-341)||(32248953-32249023)
chr3 (81-194)||(32192906-32193023)
chr3 (271-341)||(38209214-38209284)
[»] chr7 (4 HSPs)
chr7 (21-270)||(8843785-8844037)
chr7 (21-243)||(8823832-8824058)
chr7 (21-272)||(8807895-8808149)
chr7 (271-341)||(8843493-8843563)
[»] chr1 (2 HSPs)
chr1 (21-272)||(36375967-36376221)
chr1 (271-332)||(36376441-36376502)


Alignment Details
Target: chr3 (Bit Score: 127; Significance: 2e-65; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 21 - 272
Target Start/End: Complemental strand, 32249497 - 32249243
Alignment:
Q  21 aatttgatttgagaaaa-gttccaaagtaagatttgttctgaggctaattgcacgtgtggtgaaaaatgaaaaggttcttatcttttc-cacaaccttgc 118  Q
    ||||||||||||||||| |||||||||||||||||||| |||| |||||  |||| || ||||||||||||||||||||||||||||  |||||||||||    
T  32249497 aatttgatttgagaaaaagttccaaagtaagatttgttttgagcctaatctcacgagtagtgaaaaatgaaaaggttcttatcttttgtcacaaccttgc 32249398  T
Q  119 acctgtgaggtttttattagagttatttgaaaagtattttcattggcaaaatggtgaagagattctgttactaa-ctgcgaactagatttgtttgaaaga 217  Q
    ||||||||| || ||| ||||||||||||| || |||||||| |||||||||||| |||||||| || |||||| | | || ||||| ||||||||||||    
T  32249397 acctgtgagattcttaatagagttatttgagaaatattttcagtggcaaaatggtaaagagattatggtactaaccggtgagctagacttgtttgaaaga 32249298  T
Q  218 ggggaagtgatagataaatttgaagaccattgcagcagttcgaagatacttcttg 272  Q
    ||| |||||||||||||||||||||| ||  ||||| |||| |||||||||||||    
T  32249297 gggaaagtgatagataaatttgaagatcaaagcagcggttcaaagatacttcttg 32249243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 271 - 341
Target Start/End: Original strand, 32193313 - 32193383
Alignment:
Q  271 tgatttttagtgaggagtttggtgatgatccttctaaatggcaagctgagaagatttaagataatatactt 341  Q
    |||||||||||||||||||||  || |||||||||||||||||||||||||||||| ||||| ||||||||    
T  32193313 tgatttttagtgaggagtttgtggaagatccttctaaatggcaagctgagaagattgaagattatatactt 32193383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 271 - 341
Target Start/End: Complemental strand, 32249023 - 32248953
Alignment:
Q  271 tgatttttagtgaggagtttggtgatgatccttctaaatggcaagctgagaagatttaagataatatactt 341  Q
    |||||||||||||||||||||  || |||||||||||||||||||| ||||||||| ||||| ||||||||    
T  32249023 tgatttttagtgaggagtttgtggaagatccttctaaatggcaagcagagaagattgaagatgatatactt 32248953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 81 - 194
Target Start/End: Original strand, 32192906 - 32193023
Alignment:
Q  81 gaaaaatgaaaaggttcttatcttttc-cacaaccttgcacctgtgaggtttttattaga---gttatttgaaaagtattttcattggcaaaatggtgaa 176  Q
    ||||||||||||| |||||| |||||  | ||||||||||||||||||||||||  ||||   |||||||| |||||| ||||| |||| ||| ||| ||    
T  32192906 gaaaaatgaaaagattcttagcttttgtctcaaccttgcacctgtgaggtttttgatagatcagttatttgcaaagtactttcagtggcgaaagggtaaa 32193005  T
Q  177 gagattctgttactaact 194  Q
    |||||| |||||||||||    
T  32193006 gagattttgttactaact 32193023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 341
Target Start/End: Original strand, 38209214 - 38209284
Alignment:
Q  271 tgatttttagtgaggagtttggtgatgatccttctaaatggcaagctgagaagatttaagataatatactt 341  Q
    |||||||||||| |||| ||| | | ||||||||||||| | |||||||||||| | ||||| ||||||||    
T  38209214 tgatttttagtgcggaggttgttaaggatccttctaaatagaaagctgagaagaatgaagatgatatactt 38209284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 21 - 270
Target Start/End: Complemental strand, 8844037 - 8843785
Alignment:
Q  21 aatttgatttgagaaaag-ttccaaagtaagatttgttctgaggctaattgcacgtgtggtgaaaaatgaaaaggttcttatctttt-ccacaaccttgc 118  Q
    |||||||||| ||||||| ||||||| |||||||||||||||| |||||  ||||||| ||||||||||||||||||||||||||||  ||| |||||||    
T  8844037 aatttgatttaagaaaaggttccaaaataagatttgttctgagcctaatctcacgtgtagtgaaaaatgaaaaggttcttatcttttgtcactaccttgc 8843938  T
Q  119 acctgtgaggtttttattagagttatttgaaaagtattttcattggcaaaatggtgaagagattctgttactaact-gcgaactagatttgtttgaaaga 217  Q
    ||||||||| |||||  ||||||| ||||| || || ||||| |||||||||||  ||||| ||||| |||| ||| | || ||||||||||||||||||    
T  8843937 acctgtgagatttttcatagagttgtttgagaaatactttcaatggcaaaatggaaaagaggttctgatacttactggtgatctagatttgtttgaaaga 8843838  T
Q  218 ggggaagtgatagataaatttgaagaccattgcagcagttcgaagatacttct 270  Q
    ||  ||||||| ||||| |||||||| | | ||||| ||||||||||||||||    
T  8843837 ggaaaagtgattgataagtttgaagatcctcgcagcggttcgaagatacttct 8843785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 21 - 243
Target Start/End: Original strand, 8823832 - 8824058
Alignment:
Q  21 aatttgatttgagaaaag-ttccaaagtaagatttgttctgaggctaattgcacgtgtggtgaaaaatgaaaaggttcttatctttt-ccacaaccttgc 118  Q
    |||||||||| || |||| ||||||| |||||||| || |||| |||||  ||| ||| ||||||||||||||||||||||||||||  ||| || ||||    
T  8823832 aatttgatttaagtaaaggttccaaaataagattttttatgagcctaatctcacatgtagtgaaaaatgaaaaggttcttatcttttgtcactacgttgc 8823931  T
Q  119 acctgtgaggtttttattagagttatttgaaaagtattttc-attggcaaaatggtgaagagattctgttactaact-gcgaactagatttgtttgaaag 216  Q
    ||||||||| |||||  ||||||||||||| ||||| |||| || || |||||||  ||||| || || |||||||| | || |||||||||||||||||    
T  8823932 acctgtgagattttttatagagttatttgagaagtactttcaatgggaaaaatggaaaagaggttttgctactaactagtgatctagatttgtttgaaag 8824031  T
Q  217 aggggaagtgatagataaatttgaaga 243  Q
    |||| || | || ||||| ||||||||    
T  8824032 agggaaaataattgataagtttgaaga 8824058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 21 - 272
Target Start/End: Complemental strand, 8808149 - 8807895
Alignment:
Q  21 aatttgatttgagaaaagtt-ccaaagtaagatttgttctgaggctaattgcacgtgtggtgaaaaatgaaaaggttcttatctttt-ccacaaccttgc 118  Q
    ||||| ||||||||||| || ||||| | | ||||| |||||| |||||  ||| ||| |||||||||||| |||||||||||||||   || |||||||    
T  8808149 aatttaatttgagaaaaatttccaaaattaaatttggtctgagcctaatctcacctgtagtgaaaaatgaagaggttcttatcttttataactaccttgc 8808050  T
Q  119 acctgtgaggtttttattagagttatttgaaaagtattttcattggcaaaatggtgaagagattctgttactaactgcgaa-ctagatttgtttgaaaga 217  Q
    ||||  ||  |||||| ||||||||||||| ||||| ||||| ||  |||||||  ||||| ||||  |||||||||  || ||||||||||||||||||    
T  8808049 accttagaaatttttaatagagttatttgagaagtactttcaatgaaaaaatggaaaagaggttcttctactaactggtaatctagatttgtttgaaaga 8807950  T
Q  218 ggggaagtgatagataaatttgaagaccattgcagcagttcgaagatacttcttg 272  Q
    ||  ||||||| ||||| ||||||||   | ||||  |||| |||||||||||||    
T  8807949 ggaaaagtgattgataagtttgaagattctcgcagtggttcaaagatacttcttg 8807895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 341
Target Start/End: Complemental strand, 8843563 - 8843493
Alignment:
Q  271 tgatttttagtgaggagtttggtgatgatccttctaaatggcaagctgagaagatttaagataatatactt 341  Q
    |||||||||||||||||||||  || ||||| |||||||||||||| || |||||| ||||| | ||||||    
T  8843563 tgatttttagtgaggagtttgtggaagatccatctaaatggcaagcagaaaagattgaagatgaaatactt 8843493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 7e-37; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 21 - 272
Target Start/End: Original strand, 36375967 - 36376221
Alignment:
Q  21 aatttgatttgagaaaag-ttccaaagtaagatttgttctgaggctaattgcacgtgtggtgaaaaatgaaaaggttcttatcttttc-cacaaccttgc 118  Q
    |||||| ||||||||||| ||||||||||||||||||| |||| |||||  |||||||| ||| ||| ||||||||||| ||||| |  |||||||||||    
T  36375967 aatttgctttgagaaaaggttccaaagtaagatttgttttgagcctaatctcacgtgtgatgagaaaggaaaaggttctcatcttctgtcacaaccttgc 36376066  T
Q  119 acctgtgaggtttttattagagttatttgaaaagtattttcattggcaaaatggtgaagagattctgttactaact-gcgaactagatttgtttgaaaga 217  Q
    ||| |||||||||||  ||||||||||||| ||  ||||||  ||| |||||||| |||||||||||  ||||||| | |||| ||| || |||||||||    
T  36376067 accagtgaggtttttgatagagttatttgagaatcattttcggtggaaaaatggtaaagagattctgcaactaactggtgaacaagacttctttgaaaga 36376166  T
Q  218 ggggaagtgatagataaatttgaagaccattgcagcagttcgaagatacttcttg 272  Q
      | | |||||||||||||||||||| | |||  ||  ||| |||||||||||||    
T  36376167 acgaacgtgatagataaatttgaagatcgttgtggcgattcaaagatacttcttg 36376221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 271 - 332
Target Start/End: Original strand, 36376441 - 36376502
Alignment:
Q  271 tgatttttagtgaggagtttggtgatgatccttctaaatggcaagctgagaagatttaagat 332  Q
    ||||||| ||||||||| ||| ||| |||||||| ||||||||||||||||| ||| |||||    
T  36376441 tgattttcagtgaggagcttgttgaagatccttccaaatggcaagctgagaaaattgaagat 36376502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University