View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16678_low_24 (Length: 325)
Name: NF16678_low_24
Description: NF16678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16678_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 49290762 - 49290461
Alignment:
| Q |
1 |
tgtttctttatcattgtgtgtgtgcgtggttgcaaatcataatataattattggtcattctcagaacaaccagttgaacccaatatggaatgagcacttt |
100 |
Q |
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| T |
49290762 |
tgtttctttatcattgtgtgtgtgtgtggttgcaaatcataatataattattggtcatgctcagaacaaccagttgaacccaatatggaatgagcacttt |
49290663 |
T |
|
| Q |
101 |
gaattcattattgaagacgaatcaacacaacacttgaccataagaatctttgatgatgaaggcattcaagcagctgagcttattggttgtgcacaagttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
49290662 |
gaattcattattgaagacgaatcaacacaacacttgaccataagaatctttgatgatgaaggcattcaagcagctgagcttattggttgtgcccaagttt |
49290563 |
T |
|
| Q |
201 |
ccctaaaggaacttgagcctggtaaagttaaggatgtatggttgaaattggtaaaagatctagagatacacatagataacaaatataggggtgaggtaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||| ||||||||||||||||||||||||||| |
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| T |
49290562 |
ccctaaaggaacttgagcctggtaaagttaaggatgtatggttgaaattggttaaagatttagagatccacaaagataacaaatataggggtgaggtaat |
49290463 |
T |
|
| Q |
301 |
at |
302 |
Q |
| |
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|| |
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| T |
49290462 |
at |
49290461 |
T |
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