View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16678_low_26 (Length: 315)

Name: NF16678_low_26
Description: NF16678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16678_low_26
NF16678_low_26
[»] chr8 (3 HSPs)
chr8 (18-128)||(41743131-41743241)
chr8 (74-128)||(2420797-2420851)
chr8 (74-128)||(31871925-31871979)
[»] chr7 (3 HSPs)
chr7 (18-128)||(9661168-9661278)
chr7 (26-128)||(44553831-44553930)
chr7 (61-126)||(3538276-3538341)
[»] chr4 (1 HSPs)
chr4 (18-128)||(13532192-13532302)
[»] chr1 (3 HSPs)
chr1 (26-128)||(48493682-48493781)
chr1 (74-128)||(22168321-22168375)
chr1 (61-126)||(52087502-52087567)
[»] chr5 (1 HSPs)
chr5 (74-128)||(2167020-2167074)
[»] chr3 (1 HSPs)
chr3 (68-126)||(10978885-10978943)


Alignment Details
Target: chr8 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 128
Target Start/End: Original strand, 41743131 - 41743241
Alignment:
Q  18 tctttgaacatcctttgtgtttgatgattgattccacgtttggattccacctaagaaggagaagcttgggttattgttattgatttggattttgcatatt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41743131 tctttgaacatcctttgtgtttgatgattgattccacgtttggattcaacctaagaaggagaagcttgggttattgttattgatttggattttgcatatt 41743230  T
Q  118 atgaattaact 128  Q
    |||||||||||    
T  41743231 atgaattaact 41743241  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 74 - 128
Target Start/End: Original strand, 2420797 - 2420851
Alignment:
Q  74 aggagaagcttgggttattgttattgatttggattttgcatattatgaattaact 128  Q
    |||||||||||||||| |||||  |||||||||||||||| ||||||||||||||    
T  2420797 aggagaagcttgggttgttgttgatgatttggattttgcagattatgaattaact 2420851  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 74 - 128
Target Start/End: Complemental strand, 31871979 - 31871925
Alignment:
Q  74 aggagaagcttgggttattgttattgatttggattttgcatattatgaattaact 128  Q
    |||||||||||||||| |||||  |||||||||||||||| ||||||||||||||    
T  31871979 aggagaagcttgggttgttgttgatgatttggattttgcagattatgaattaact 31871925  T

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Target: chr7 (Bit Score: 91; Significance: 4e-44; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 9661278 - 9661168
Alignment:
Q  18 tctttgaacatcctttgtgtttgatgattgattccacgtttggattccacctaagaaggagaagcttgggttattgttattgatttggattttgcatatt 117  Q
    |||||||||||||||||||||||| |||||| ||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  9661278 tctttgaacatcctttgtgtttgaggattgaatccacatttggattcaacctaagaaggagaagcttgtgttattgttattgatttggattttgcatatt 9661179  T
Q  118 atgaattaact 128  Q
    |||||||||||    
T  9661178 atgaattaact 9661168  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 128
Target Start/End: Complemental strand, 44553930 - 44553831
Alignment:
Q  26 catcctttgtgtttgatgattgattccacgtttggattccacctaagaaggagaagcttgggttattgttattgatttggattttgcatattatgaatta 125  Q
    |||| ||||||||| |||||||||||  ||||||||||  | |||||||||||||| |||||    |||| ||||||||||||||| | |||||||||||    
T  44553930 catcttttgtgtttcatgattgattctgcgtttggatttaatctaagaaggagaagtttggg---atgttgttgatttggattttgtagattatgaatta 44553834  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 126
Target Start/End: Original strand, 3538276 - 3538341
Alignment:
Q  61 attccacctaagaaggagaagcttgggttattgttattgatttggattttgcatattatgaattaa 126  Q
    |||| ||||||||||||||||||||| || |||||  ||||||||||||| || ||||| ||||||    
T  3538276 attcaacctaagaaggagaagcttggattgttgttgatgatttggatttttcagattattaattaa 3538341  T

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Target: chr4 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 13532302 - 13532192
Alignment:
Q  18 tctttgaacatcctttgtgtttgatgattgattccacgtttggattccacctaagaaggagaagcttgggttattgttattgatttggattttgcatatt 117  Q
    |||||||||||||||||||||||| |||||| ||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  13532302 tctttgaacatcctttgtgtttgaggattgaatccacatttggattcaacctaagaaggagaagcttgtgttattgttattgatttggattttgcatatt 13532203  T
Q  118 atgaattaact 128  Q
    |||||||||||    
T  13532202 atgaattaact 13532192  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 128
Target Start/End: Original strand, 48493682 - 48493781
Alignment:
Q  26 catcctttgtgtttgatgattgattccacgtttggattccacctaagaaggagaagcttgggttattgttattgatttggattttgcatattatgaatta 125  Q
    |||| ||||||||| |||||||||||  ||||||||||  | |||||||||||||| |||||    |||| ||||||||||||||| | |||||||||||    
T  48493682 catcttttgtgtttcatgattgattctgcgtttggatttaatctaagaaggagaagtttggg---atgttgttgatttggattttgtagattatgaatta 48493778  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 128
Target Start/End: Complemental strand, 22168375 - 22168321
Alignment:
Q  74 aggagaagcttgggttattgttattgatttggattttgcatattatgaattaact 128  Q
    |||||||||||| ||| |||||  |||||||||||||||| ||||||||||||||    
T  22168375 aggagaagcttgagttgttgttgatgatttggattttgcagattatgaattaact 22168321  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 126
Target Start/End: Original strand, 52087502 - 52087567
Alignment:
Q  61 attccacctaagaaggagaagcttgggttattgttattgatttggattttgcatattatgaattaa 126  Q
    |||| ||||||||||||||||||||| |  |||||  ||||||| ||||| || ||||||||||||    
T  52087502 attcaacctaagaaggagaagcttggatagttgttgatgatttgaatttttcagattatgaattaa 52087567  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 128
Target Start/End: Original strand, 2167020 - 2167074
Alignment:
Q  74 aggagaagcttgggttattgttattgatttggattttgcatattatgaattaact 128  Q
    |||||||| ||||||| |||||  |||||||||||||||| ||||||||||||||    
T  2167020 aggagaagtttgggttgttgttgatgatttggattttgcagattatgaattaact 2167074  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 126
Target Start/End: Original strand, 10978885 - 10978943
Alignment:
Q  68 ctaagaaggagaagcttgggttattgttattgatttggattttgcatattatgaattaa 126  Q
    |||||||||||||||| || || |||||  ||||||||||||| |||||||||||||||    
T  10978885 ctaagaaggagaagctaggattgttgttgatgatttggatttttcatattatgaattaa 10978943  T

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