View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16678_low_28 (Length: 301)

Name: NF16678_low_28
Description: NF16678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16678_low_28
NF16678_low_28
[»] chr6 (8 HSPs)
chr6 (15-283)||(29471129-29471397)
chr6 (39-273)||(29689876-29690110)
chr6 (40-283)||(29663426-29663666)
chr6 (39-273)||(29767858-29768092)
chr6 (155-272)||(28488168-28488285)
chr6 (155-272)||(29800580-29800697)
chr6 (56-123)||(28488347-28488414)
chr6 (56-123)||(29800759-29800826)
[»] scaffold0007 (1 HSPs)
scaffold0007 (63-273)||(74364-74574)
[»] chr3 (1 HSPs)
chr3 (41-273)||(618069-618286)
[»] scaffold0012 (3 HSPs)
scaffold0012 (155-273)||(209916-210034)
scaffold0012 (41-106)||(236354-236419)
scaffold0012 (51-91)||(210083-210123)


Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 15 - 283
Target Start/End: Original strand, 29471129 - 29471397
Alignment:
Q  15 gagatgaataatataacagaaattcacttggataatactctcatacaagaattgccgtttccatttcaaaatcttactccgcctcaaacattatatccat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  29471129 gagatgaataatataacagaaattcacttggataatactctcatacaagaattgccgtttccatttcaaaatcttactccgcctcaaacattatatcaat 29471228  T
Q  115 gtaactgtggagttgtttatttatcgaatagagctgctgtgatgtcaaaactggctgaatctaccatccaggctgaagaaaaagagagcccaatgcaatc 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  29471229 gtaactgtggagttgtttatttatcgaatagagctgctgtgatgtcaaaactggctgaatttaccatccaggctgaagaaaaagtgagcccaatgcaatc 29471328  T
Q  215 ttcacatgtagaatatatttgtctgaggaactgcaaattttcagatgaatatttgtcaacgggtctcat 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29471329 ttcacatgtagaatatatttgtctgaggaactgcaaattttcagatgaatatttgtcaacgggtctcat 29471397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 39 - 273
Target Start/End: Complemental strand, 29690110 - 29689876
Alignment:
Q  39 cacttggataatactctcatacaagaattgccgtttccatttcaaaatcttactccgcctcaaacattatatccatgtaactgtggagttgtttatttat 138  Q
    ||||||||| | |||| |||| ||||||| ||||||||||||||||||||||| | ||| |||||||  ||||||||||||||||||  |  ||  ||      
T  29690110 cacttggatgaaactcccataaaagaattaccgtttccatttcaaaatcttacacagccccaaacatattatccatgtaactgtggacattcttgctttc 29690011  T
Q  139 cgaatagagctgctgtgatgtcaaaactggctgaa-tctaccatccaggctgaagaaaaagagagcccaatgcaatcttcacatgtagaatatatttgtc 237  Q
    | ||||||||| || ||||||||||| |||||||| ||| |||| ||||| || ||||||  ||||||||| ||||||||||||||| | |||||||||     
T  29690010 caaatagagcttctttgatgtcaaaaatggctgaactct-ccattcaggccgaggaaaaaatgagcccaatacaatcttcacatgtaaagtatatttgtg 29689912  T
Q  238 tgaggaactgcaaattttcagatgaatatttgtcaa 273  Q
    ||| ||| |||||| |||||||||||||| ||||||    
T  29689911 tgaagaaatgcaaactttcagatgaatatctgtcaa 29689876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 40 - 283
Target Start/End: Complemental strand, 29663666 - 29663426
Alignment:
Q  40 acttggataatactctcatacaagaattgccgtttccatttcaaaatcttactccgcctcaaacattatatccatgtaactgtggagttgtttatttatc 139  Q
    |||||||  |||||| |||| ||||||||||||||||||||||||||||||||| |||| |||   |||||||||||||||||||| ||||||  ||| |    
T  29663666 acttggaatatactcccataaaagaattgccgtttccatttcaaaatcttactctgcctaaaa---tatatccatgtaactgtggatttgtttccttacc 29663570  T
Q  140 gaatagagctgctgtgatgtcaaaactggctgaatctaccatccaggctgaagaaaaagagagcccaatgcaatcttcacatgtagaatatatttgtctg 239  Q
     | |||   |  || ||||||||||||||  |||| |||||||||||||||| |||||| || ||| || ||||||| ||| |||||||||||||||||     
T  29663569 aactagtaattatgcgatgtcaaaactggtggaatgtaccatccaggctgaacaaaaagtgatcccgatccaatctttacacgtagaatatatttgtctt 29663470  T
Q  240 aggaactgcaaattttcagatgaatatttgtcaacgggtctcat 283  Q
    || || || ||| || ||||||| || |||||||  ||||||||    
T  29663469 agaaattgaaaagttccagatgagtacttgtcaataggtctcat 29663426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 39 - 273
Target Start/End: Complemental strand, 29768092 - 29767858
Alignment:
Q  39 cacttggataatactctcatacaagaattgccgtttccatttcaaaatcttactccgcctcaaacattatatccatgtaactgtggagttgtttatttat 138  Q
    ||||||||| | |||| |||| ||||||| || |||| |||||||| |||||||| |||||||| |||   | ||||| ||||||||  ||     |||     
T  29768092 cacttggatgaaactcccataaaagaatttccatttcaatttcaaactcttactcagcctcaaagatttgtttcatgtgactgtggatatggccgcttac 29767993  T
Q  139 cgaatagagctgctgtgatgtcaaaactggctgaatctaccatccaggctgaagaaaaagagagcccaatgcaatcttcacatgtagaatatatttgtct 238  Q
    | ||||||| || |||||||||| ||  |||||||  ||||||| ||||||||||||||  || || ||||||||||||||||||| | ||||||||| |    
T  29767992 caaatagagatgttgtgatgtcagaatcggctgaacttaccatcaaggctgaagaaaaaatgaaccaaatgcaatcttcacatgtaaagtatatttgtgt 29767893  T
Q  239 gaggaactgcaaattttcagatgaatatttgtcaa 273  Q
     |||||||||||| |||||||||||||| ||||||    
T  29767892 caggaactgcaaactttcagatgaatatctgtcaa 29767858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 155 - 272
Target Start/End: Complemental strand, 28488285 - 28488168
Alignment:
Q  155 gatgtcaaaactggctgaatctaccatccaggctgaagaaaaagagagcccaatgcaatcttcacatgtagaatatatttgtctgaggaactgcaaattt 254  Q
    |||||||||| ||||||||| ||||||||||  ||||||||||| |  | |||| |||||| |||||||| | ||||||||  | ||| |||||||| ||    
T  28488285 gatgtcaaaagtggctgaatttaccatccagaatgaagaaaaagtgtacgcaatccaatctgcacatgtaaagtatatttgcatcagggactgcaaactt 28488186  T
Q  255 tcagatgaatatttgtca 272  Q
    |||||||||||| |||||    
T  28488185 tcagatgaatatctgtca 28488168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 155 - 272
Target Start/End: Complemental strand, 29800697 - 29800580
Alignment:
Q  155 gatgtcaaaactggctgaatctaccatccaggctgaagaaaaagagagcccaatgcaatcttcacatgtagaatatatttgtctgaggaactgcaaattt 254  Q
    |||||||||| ||||||||| ||||||||||  ||||||||||| |  | |||| |||||| |||||||| | ||||||||  | ||| |||||||| ||    
T  29800697 gatgtcaaaagtggctgaatttaccatccagaatgaagaaaaagtgtacgcaatccaatctgcacatgtaaagtatatttgcatcagggactgcaaactt 29800598  T
Q  255 tcagatgaatatttgtca 272  Q
    |||||||||||| |||||    
T  29800597 tcagatgaatatctgtca 29800580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 123
Target Start/End: Complemental strand, 28488414 - 28488347
Alignment:
Q  56 catacaagaattgccgtttccatttcaaaatcttactccgcctcaaacattatatccatgtaactgtg 123  Q
    |||| |||| ||||| |||||||||||||||||||| | || |||||||||  |||||||||||||||    
T  28488414 catagaagagttgccatttccatttcaaaatcttacccagcttcaaacatttcatccatgtaactgtg 28488347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 123
Target Start/End: Complemental strand, 29800826 - 29800759
Alignment:
Q  56 catacaagaattgccgtttccatttcaaaatcttactccgcctcaaacattatatccatgtaactgtg 123  Q
    |||| |||| ||||| |||||||||||||||||||| | || |||||||||  |||||||||||||||    
T  29800826 catagaagagttgccatttccatttcaaaatcttacccagcttcaaacatttcatccatgtaactgtg 29800759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 63 - 273
Target Start/End: Original strand, 74364 - 74574
Alignment:
Q  63 gaattgccgtttccatttcaaaatcttactccgcctcaaacattatatccatgtaactgtggagttgtttatttatcgaatagagctgctgtgatgtcaa 162  Q
    ||||| |||||||||||| |||||| ||||| || || ||||| ||||||||| || ||||||  |||||||||| | ||||||| || ||   ||||      
T  74364 gaatttccgtttccatttgaaaatcatactctgcttccaacatcatatccatgcaaatgtggaactgtttatttaccaaatagagttgttgcattgtcgc 74463  T
Q  163 aactggctgaatctaccatccaggctgaagaaaaagagagcccaatgcaatcttcacatgtagaatatatttgtctgaggaactgcaaattttcagatga 262  Q
      |||||||||| || |||| ||| ||||  ||||| |||||| | |||||||||||| ||||||||||||||||| |||||||||||| ||||||||||    
T  74464 tgctggctgaatttatcatcaagggtgaaagaaaagtgagcccgaagcaatcttcacaagtagaatatatttgtctcaggaactgcaaactttcagatga 74563  T
Q  263 atatttgtcaa 273  Q
    |||||| ||||    
T  74564 atatttttcaa 74574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 41 - 273
Target Start/End: Original strand, 618069 - 618286
Alignment:
Q  41 cttggataatactctcatacaagaattgccgtttccatttcaaaatcttactccgcctcaaacattatatccatgtaactgtggagttgtttatttatcg 140  Q
    ||||||| | |||| |||| ||||||||||||||||||||||||||||||| |  |||||||||||||      |||||||||||  ||| || ||| |     
T  618069 cttggatgaaactcccataaaagaattgccgtttccatttcaaaatcttacacaacctcaaacattat------gtaactgtggatatgtctacttacca 618162  T
Q  141 aatagagctgctgtgatgtcaaaactggctgaatctaccatccaggctgaagaaaaagagagcccaatgcaatcttcacatgtagaatatatttgtctga 240  Q
    |||||         |||||||| ||||||||||| ||| ||||||  |||||| |||| || | |||||||||||||||||||| |  |||||||| | |    
T  618163 aatag---------gatgtcaagactggctgaatttactatccagaatgaagagaaagtgaacgcaatgcaatcttcacatgtaaagcatatttgtgtca 618253  T
Q  241 ggaactgcaaattttcagatgaatatttgtcaa 273  Q
    ||||||||||| |||||||||||||| ||||||    
T  618254 ggaactgcaaactttcagatgaatatctgtcaa 618286  T

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Target: scaffold0012 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 155 - 273
Target Start/End: Complemental strand, 210034 - 209916
Alignment:
Q  155 gatgtcaaaactggctgaatctaccatccaggctgaagaaaaagagagcccaatgcaatcttcacatgtagaatatatttgtctgaggaactgcaaattt 254  Q
    |||||||| ||||||||||| ||||||| ||  ||||||||||| || | |||||||||||| ||||||| | ||||||||| | ||||  |||||  ||    
T  210034 gatgtcaacactggctgaatttaccatcaagaatgaagaaaaagtgaacacaatgcaatctttacatgtaaagtatatttgtgtcaggaggtgcaatctt 209935  T
Q  255 tcagatgaatatttgtcaa 273  Q
    |||||||||||| ||||||    
T  209934 tcagatgaatatctgtcaa 209916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 106
Target Start/End: Complemental strand, 236419 - 236354
Alignment:
Q  41 cttggataatactctcatacaagaattgccgtttccatttcaaaatcttactccgcctcaaacatt 106  Q
    ||||||| | ||||||||| ||||||||| |||||| ||| ||||||||||||| ||| |||||||    
T  236419 cttggatgaaactctcataaaagaattgctgtttccgttttaaaatcttactccacctgaaacatt 236354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 210123 - 210083
Alignment:
Q  51 actctcatacaagaattgccgtttccatttcaaaatcttac 91  Q
    |||| |||| |||||||||||||||||||| ||||||||||    
T  210123 actcccataaaagaattgccgtttccatttaaaaatcttac 210083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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