View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16678_low_29 (Length: 301)

Name: NF16678_low_29
Description: NF16678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16678_low_29
NF16678_low_29
[»] chr2 (2 HSPs)
chr2 (99-163)||(6019018-6019082)
chr2 (240-301)||(6018875-6018936)
[»] chr4 (1 HSPs)
chr4 (240-295)||(20944708-20944763)
[»] chr3 (2 HSPs)
chr3 (102-146)||(38009650-38009694)
chr3 (244-276)||(38009798-38009830)


Alignment Details
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 99 - 163
Target Start/End: Complemental strand, 6019082 - 6019018
Alignment:
Q  99 aacttacttgcagaaaagatgattgcaggtgagtgaaactgcggaatgaagtaaacccagactac 163  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6019082 aacttacttgcagaaaagatgattgcaggtgagtgaaactgcggaatgaagtaaacccagactac 6019018  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 240 - 301
Target Start/End: Complemental strand, 6018936 - 6018875
Alignment:
Q  240 ttggtaccagattggacatttgagttctcttcccattttttcaagatcccccatttctgatt 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6018936 ttggtaccagattggacatttgagttctcttcccattttttcaagatcccccatttctgatt 6018875  T

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Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 240 - 295
Target Start/End: Complemental strand, 20944763 - 20944708
Alignment:
Q  240 ttggtaccagattggacatttgagttctcttcccattttttcaagatcccccattt 295  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||    
T  20944763 ttggtaccagattggacatttgagttctctgcccatgttttcaagatccaccattt 20944708  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 146
Target Start/End: Original strand, 38009650 - 38009694
Alignment:
Q  102 ttacttgcagaaaagatgattgcaggtgagtgaaactgcggaatg 146  Q
    ||||||||||||||| ||||| | ||||||||||||||| |||||    
T  38009650 ttacttgcagaaaagttgattccgggtgagtgaaactgcagaatg 38009694  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 276
Target Start/End: Original strand, 38009798 - 38009830
Alignment:
Q  244 taccagattggacatttgagttctcttcccatt 276  Q
    |||||||||||||||||||||||||| ||||||    
T  38009798 taccagattggacatttgagttctctgcccatt 38009830  T

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