View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16678_low_3 (Length: 776)
Name: NF16678_low_3
Description: NF16678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16678_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 332 - 771
Target Start/End: Complemental strand, 1906984 - 1906533
Alignment:
| Q |
332 |
cgactttccctccctaaaggtagaggatctttgtctatatattgtccgagtaagttagttttaca------------gaagacgttcgttttcctttgac |
419 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
1906984 |
cgactttccctccctgaaggtagaggatctttgtctatatattgtccgagtaagttagttttacaatgacataactagaagacgtttgttttcctttgac |
1906885 |
T |
|
| Q |
420 |
gcgttatattttttaaaatgtagtaataaaagtagagtgatgtaacaaaataatgaatttttattgggtatcatatcctttaatctaaaattaattacta |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1906884 |
gcgttatattttttaaaatgtagtaataaaagtagagtgatgtaacaaaataatgaatttttattgggtatcatatcctttaatctaaaattaattacta |
1906785 |
T |
|
| Q |
520 |
ttttacactatgaatgcataattattatgttctgttgttgcttttgtattttaggttcacacgagtacattgaagtgattgcaagcacaacaacaaggaa |
619 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1906784 |
ttttacactatgaatgcataattattatgttctgttgttgcttttgtattttaggttcacacgaatacattgaagtgattgcaagcacaacaacaaggaa |
1906685 |
T |
|
| Q |
620 |
gaaacaagtaagatttctgattgaattggaattgaaagagcagttccagattgcaaaagcaggtgaagaataccagaaacttgtgtcttgtttgcctgaa |
719 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1906684 |
gaaacaagtaagatttctgattgaattggaattgaaagagcagttccagattgcaaaagcaggtgaagaataccagaaacttgtgtcttgtttgcctgaa |
1906585 |
T |
|
| Q |
720 |
ttttatgtcgggaagccagagtacttaaccgcgattgttcgacttgtctgtg |
771 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1906584 |
ttttatgtcgggaagccagagtacttaaccgcgattgttcgacttgtgtgtg |
1906533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 16 - 249
Target Start/End: Complemental strand, 1907300 - 1907067
Alignment:
| Q |
16 |
gaaagaggattcactaccaacctttgcacatcaagatggaaaaccacaaatgaatttccaggaggtgcatatataattcaactcctacattacctaaata |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1907300 |
gaaagaggattcactaccaacctttgcacatcaagatggaaaaccacaaatgaatttccaggaggtgcatatataattcaactcctacattacctaaata |
1907201 |
T |
|
| Q |
116 |
gttattataaagtttggacattccacattttacaatctaatattaaagggtttaattagatccaatatacaagatagagtttattagacacatattgcgg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1907200 |
gttattataaagtttggacattccacattttacaatctaatattaaagggttgaattagatccaatatacaagatagagtttattagacacatattgcgg |
1907101 |
T |
|
| Q |
216 |
atttggattctctaccttttggtgactttaggct |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
1907100 |
atttggattctctaccttttggtgactttaggct |
1907067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University