View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16678_low_30 (Length: 294)
Name: NF16678_low_30
Description: NF16678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16678_low_30 |
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| [»] scaffold0182 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 15 - 275
Target Start/End: Original strand, 267256 - 267523
Alignment:
| Q |
15 |
caaaggccatgtcacttaaccattctattgctttatacaaagccaacacttctcccattaccact-------ttggggaaatagggattgattgagccaa |
107 |
Q |
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| T |
267256 |
caaacgccatgtcacttaaccattctattgctttatacaaagccaaagcttctcccattaccactggacactttggggaaatagggattgattgagccaa |
267355 |
T |
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| Q |
108 |
aataaaagtaccctcctcatctcggatgcatataccaatgcccgtcttgttgaattgatcggagaaggctgcatctatattacacttcactctacctcgc |
207 |
Q |
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| T |
267356 |
aataaaagtaccctcctcatctcggatgcatataccaatgcccgtcttgttgaattgatctcagaaggttgcatctatattacacttcactctacctcgc |
267455 |
T |
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| Q |
208 |
gacggtggctgccagcgagactgtccagtgctggaactgcccgcacctgctgctacatctgtgggaat |
275 |
Q |
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| T |
267456 |
gacggtggctgccagcgagactgtctagtgctggaactgcccgcacctgctgctacatccgtgggaat |
267523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 15 - 275
Target Start/End: Original strand, 14132000 - 14132266
Alignment:
| Q |
15 |
caaaggccatgtcacttaaccattctattgctttatacaaagccaacacttctcccattaccact-------ttggggaaatagggattgattgagccaa |
107 |
Q |
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| T |
14132000 |
caaaggccatgtcacttaaccattctattgctttatacaaagccaatgcttctcccattaccactggacaccttggggaaatagggattgattgagccaa |
14132099 |
T |
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| Q |
108 |
aataaaagtaccctcctcatctcggatgcatataccaatgcccgtcttgttgaattgatcggagaaggctgcatctatattacacttcactctacctcgc |
207 |
Q |
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| T |
14132100 |
aataaatgtgccctcctcatctcggatgcatataccaatgcccgtcttgttgaattgattggagaaggctgcatctatattacacttcactctacctcgc |
14132199 |
T |
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| Q |
208 |
gacggtggctgccagcgagactgtccagtgctggaactgcccgcacctgctgctacatctgtgggaat |
275 |
Q |
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| T |
14132200 |
gacggtggatgccagcgagactg-gcagtgctggaactgcccgcacctgctgctacatccgtgagaat |
14132266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 12149 - 12204
Alignment:
| Q |
220 |
cagcgagactgtccagtgctggaactgcccgcacctgctgctacatctgtgggaat |
275 |
Q |
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| T |
12149 |
cagcgagactgtccagtgctggaactgcccacacctgctgctacatccgtgggaat |
12204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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