View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16678_low_33 (Length: 293)

Name: NF16678_low_33
Description: NF16678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16678_low_33
NF16678_low_33
[»] chr6 (5 HSPs)
chr6 (4-277)||(3421373-3421647)
chr6 (13-80)||(28747132-28747199)
chr6 (1-80)||(6068619-6068698)
chr6 (1-78)||(8417793-8417870)
chr6 (21-61)||(14236696-14236736)
[»] chr2 (2 HSPs)
chr2 (11-63)||(1912837-1912889)
chr2 (1-81)||(30099179-30099259)
[»] chr8 (1 HSPs)
chr8 (13-63)||(8587235-8587285)
[»] chr3 (2 HSPs)
chr3 (13-63)||(33942947-33942997)
chr3 (13-82)||(8437490-8437559)
[»] chr1 (2 HSPs)
chr1 (13-63)||(17556818-17556868)
chr1 (22-63)||(21537943-21537984)
[»] chr5 (1 HSPs)
chr5 (13-82)||(11795233-11795302)


Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 4 - 277
Target Start/End: Complemental strand, 3421647 - 3421373
Alignment:
Q  4 tagattgattttttaataagatatatcaacttttgttgactcaagtttttcttataaatatggctgaagggagtataatcaagagtctgtgtagtatcgt 103  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3421647 tagattgattttttaataagatatatcaacttttgttgactcaaatttttcttataaatatggctgaagggagtataatcaagagtctgtgtagtatcgt 3421548  T
Q  104 tgtcggacacaatacata-tctaatagtgagacaagactaatctaagtagaatatgtgcttcatagatgaactataaacattataataaaaatgacaaaa 202  Q
    |||||||||  ||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3421547 tgtcggacaatatacataatctaatagtgagaaaagcctaatctaagtagaatatgtgcttcatagatgaactataaacattataataaaaatgacaaaa 3421448  T
Q  203 catttactgcattttctggtaattataatgcattggattcactggcttcttgaccctaaattttgacttattgat 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3421447 catttactgcattttctggtaattataatgcattggattcactggcttcttgaccctaaattttgacttattgat 3421373  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 28747199 - 28747132
Alignment:
Q  13 tttttaataagatatatcaacttttgttgactcaagtttttcttataaatatggctgaagggagtata 80  Q
    |||||||| ||||| |||||||||||||||| |||  || ||||||||||| | ||||||||||||||    
T  28747199 tttttaattagatacatcaacttttgttgacccaaaattctcttataaataggactgaagggagtata 28747132  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 6068619 - 6068698
Alignment:
Q  1 atttagattgattttttaataagatatatcaacttttgttgactcaagtttttcttataaatatggctgaagggagtata 80  Q
    |||| |||||| |||||||  ||||| ||||||||||||||||||||  || ||||||||||| | | | ||||||||||    
T  6068619 atttggattgaatttttaactagatacatcaacttttgttgactcaaaattctcttataaataggaccggagggagtata 6068698  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 8417870 - 8417793
Alignment:
Q  1 atttagattgattttttaataagatatatcaacttttgttgactcaagtttttcttataaatatggctgaagggagta 78  Q
    |||| |||||| |||||||  ||||| |||||||||||||||| |||  || ||||||||||| | | ||||||||||    
T  8417870 atttggattgaatttttaactagatacatcaacttttgttgacccaaaattctcttataaataggaccgaagggagta 8417793  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 14236696 - 14236736
Alignment:
Q  21 aagatatatcaacttttgttgactcaagtttttcttataaa 61  Q
    |||||| |||||||||||||||||||| ||| |||||||||    
T  14236696 aagatacatcaacttttgttgactcaactttctcttataaa 14236736  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 1912889 - 1912837
Alignment:
Q  11 attttttaataagatatatcaacttttgttgactcaagtttttcttataaata 63  Q
    |||||||||  |||||||||||||||| ||||||||| | |||||||||||||    
T  1912889 attttttaaatagatatatcaactttttttgactcaaatatttcttataaata 1912837  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 30099259 - 30099179
Alignment:
Q  1 atttagattgattttttaataagatatatcaacttttgttgactcaagtttttcttataaatatggctgaagggagtataa 81  Q
    |||| |||||| |||||||| ||||| |||||||||||||||| |||  || ||| ||||||| | | | |||||||||||    
T  30099259 atttggattgaatttttaattagatacatcaacttttgttgacccaaaattctctaataaataggaccggagggagtataa 30099179  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 8587235 - 8587285
Alignment:
Q  13 tttttaataagatatatcaacttttgttgactcaagtttttcttataaata 63  Q
    |||||||  ||||| |||||||||| ||||||||||||| |||||||||||    
T  8587235 tttttaactagatacatcaacttttattgactcaagtttctcttataaata 8587285  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 33942997 - 33942947
Alignment:
Q  13 tttttaataagatatatcaacttttgttgactcaagtttttcttataaata 63  Q
    |||||||  ||||| |||||||||||||||| ||||||| |||||||||||    
T  33942997 tttttaactagatacatcaacttttgttgacccaagtttctcttataaata 33942947  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 8437490 - 8437559
Alignment:
Q  13 tttttaataagatatatcaacttttgttgactcaagtttttcttataaatatggctgaagggagtataat 82  Q
    |||||||  ||||| ||||||||||||||||||||  || ||||||||||| | | | ||||||||||||    
T  8437490 tttttaactagatacatcaacttttgttgactcaaaattctcttataaataggaccggagggagtataat 8437559  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 17556818 - 17556868
Alignment:
Q  13 tttttaataagatatatcaacttttgttgactcaagtttttcttataaata 63  Q
    |||||||  ||||| |||||||||||||||| ||||||| |||||||||||    
T  17556818 tttttaactagatacatcaacttttgttgacccaagtttctcttataaata 17556868  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 21537943 - 21537984
Alignment:
Q  22 agatatatcaacttttgttgactcaagtttttcttataaata 63  Q
    ||||| |||||||||||||||||||| ||| |||||||||||    
T  21537943 agatacatcaacttttgttgactcaattttctcttataaata 21537984  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 11795233 - 11795302
Alignment:
Q  13 tttttaataagatatatcaacttttgttgactcaagtttttcttataaatatggctgaagggagtataat 82  Q
    |||||||  ||||| |||||||||||||||| |||  || ||||||||||| | ||| ||||||||||||    
T  11795233 tttttaactagatacatcaacttttgttgacccaaaattctcttataaataggactggagggagtataat 11795302  T

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