View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16678_low_34 (Length: 289)
Name: NF16678_low_34
Description: NF16678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16678_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 18 - 284
Target Start/End: Complemental strand, 7276992 - 7276726
Alignment:
| Q |
18 |
cagacatagttgttccatagttcttgtaaaggaggtttgacaagtcatcaattttgcttgagtctattccaagcttctcaaccatataatctaagatcaa |
117 |
Q |
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| T |
7276992 |
cagacatagttgttccatagttcttgtaaaggaggtttgacaagtcatcaattttgcttgagtctattccaagcttctcaaccatataatctaagatcaa |
7276893 |
T |
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| Q |
118 |
ataatacaatcacttatgttaatattcaacacctctagaaacaacatataacaccgacacttcaaattgaatgttatctggtgtccaacactgacacata |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
7276892 |
ataatacaatcacttatgttaatattcaacacctctagaaacaacatataacaccgacacttcaaattgaatgttatctggtgtccgacactgacacatg |
7276793 |
T |
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| Q |
218 |
ttgttacatttaattactttcattctcttaaattattatcagtatctgcatgtcagtatcgtctctg |
284 |
Q |
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|||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||| |||| |
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| T |
7276792 |
ttgttacatttaattactttcattcttttaagttattatcagtgtctgcatgtcagtatcgtgtctg |
7276726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 257
Target Start/End: Complemental strand, 25260585 - 25260539
Alignment:
| Q |
211 |
acacatattgttacatttaattactttcattctcttaaattattatc |
257 |
Q |
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| T |
25260585 |
acacatttggttacatttaattacttccattttcttaaattattatc |
25260539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 254
Target Start/End: Complemental strand, 23966095 - 23966051
Alignment:
| Q |
210 |
gacacatattgttacatttaattactttcattctcttaaattatt |
254 |
Q |
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| T |
23966095 |
gacacatattgttacattgaatcactttcattttcgtaaattatt |
23966051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 110
Target Start/End: Original strand, 22560109 - 22560197
Alignment:
| Q |
22 |
catagttgttccatagttcttgtaaaggaggtttgacaagtcatcaattttgcttgagtctattccaagcttctcaaccatataatcta |
110 |
Q |
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|||||||||||| ||||| |||||||| |||| ||||||||||||||| ||||| |||||| ||||||||||||||||||||||||| |
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| T |
22560109 |
catagttgttccgtagtttttgtaaagatggttggacaagtcatcaattatgcttctgtctatgccaagcttctcaaccatataatcta |
22560197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 279
Target Start/End: Complemental strand, 30289866 - 30289794
Alignment:
| Q |
207 |
actgacacatattgttacatttaattactttcattctcttaaattattatcagtatctgcatgtcagtatcgt |
279 |
Q |
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| T |
30289866 |
actgacacacatggttacattcaattactcacattttcttaaattattaccagtgtctacatgtcagtgtcgt |
30289794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 255
Target Start/End: Complemental strand, 16331037 - 16330989
Alignment:
| Q |
207 |
actgacacatattgttacatttaattactttcattctcttaaattatta |
255 |
Q |
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|||||||||| | |||||||||||| | ||||||| ||||||||||||| |
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| T |
16331037 |
actgacacatgtggttacatttaatcattttcattttcttaaattatta |
16330989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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