View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16678_low_36 (Length: 263)
Name: NF16678_low_36
Description: NF16678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16678_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 46373774 - 46374020
Alignment:
| Q |
1 |
tagtactagtcattcatgtgtttatgaaattttgaaccaataaatgatatatagaatgaaagtatgaagcttaagttattgtttatcttacaattacttc |
100 |
Q |
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| T |
46373774 |
tagtactagtcattcatgtgtttatgaaattttgaaccaataaatgatatatagaatgaaagtatgaagcttaagttattgtttatcttacaattacttc |
46373873 |
T |
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| Q |
101 |
aatttctaaaggtattgccccattgggaggtctttcttttcacctgatataagaagaccacaacggcttggagagggattagagtcatggtgtggatttt |
200 |
Q |
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| T |
46373874 |
aatttctaaaggtattgccccattgggaggtctttcttttcacctgatataagaagaccacaacggcttggagagggattagagtcatggtgtggatttt |
46373973 |
T |
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| Q |
201 |
accagagcataaggcctactcagatgggcctttccctcaatataggt |
247 |
Q |
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| T |
46373974 |
accagagcataaggcctactcagatgggcctttccctcaatataggt |
46374020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 98 - 243
Target Start/End: Original strand, 15408158 - 15408303
Alignment:
| Q |
98 |
ttcaatttctaaaggtattgccccattgggaggtctttcttttcacctgatataagaagaccacaacggcttggagagggattagagtcatggtgtggat |
197 |
Q |
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| T |
15408158 |
ttcattttctaaaggttttgtcctatcgggaggtcattttattcacctgatattagagcaccacaacgactcggagaaggattgaagtcgtggtgtggat |
15408257 |
T |
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| Q |
198 |
tttaccagagcataaggcctactcagatgggcctttccctcaatat |
243 |
Q |
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| T |
15408258 |
tttaccaaagcataaggcctactcagatgggcctttcactcaatat |
15408303 |
T |
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