View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16678_low_37 (Length: 250)
Name: NF16678_low_37
Description: NF16678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16678_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 8 - 234
Target Start/End: Original strand, 53467301 - 53467540
Alignment:
| Q |
8 |
taaacaacactcattactcaacaacgacattacaaagtgaaaagaaaagaaaatcgcttctc---------------ataagagcgttttgtaacatatg |
92 |
Q |
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| T |
53467301 |
taaacaacactcattacccaacaatgacattacaaagtgaaaagaaaagcaaatcgcttctctctccgttcttaatcataagagcgttttgtaacatatg |
53467400 |
T |
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| Q |
93 |
tttatcttgtacatctctttacaaattttgataaacatttatcattcattttccaaacacatcccttattattaattctatcgatttttcttggaatatg |
192 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53467401 |
tttatcttgtacatctctttacaaattttgataaacatttatcattcattttccaaacacatcccttattattaattctatcgatttttcttggaatatg |
53467500 |
T |
|
| Q |
193 |
caaaattaatattgggtgtatatctatacataaatgatagta |
234 |
Q |
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|||||||||||||||||| |||||||||||||||||||||| |
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| T |
53467501 |
caaaattaatattgggtg--tatctatacataaatgatagta |
53467540 |
T |
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