View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16678_low_41 (Length: 218)
Name: NF16678_low_41
Description: NF16678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16678_low_41 |
 | |
|
| [»] scaffold0182 (1 HSPs) |
| | |
|
| [»] scaffold0006 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0182 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 13 - 199
Target Start/End: Complemental strand, 28393 - 28207
Alignment:
| Q |
13 |
gtgagatgaaggctgcaatcgttgaaaaagaagcaatatttgtcactgatgaagttgtggctgcatcaacatcaatggtataaaagtacatattatgtag |
112 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
28393 |
gtgaaatgaaggctgcaatcgttgaaaaagaagcaatatttgtcactgatgaagttgtggctgcatcaacatcaatgatataaaagttcatattatgtag |
28294 |
T |
|
| Q |
113 |
gtgactttatagatttcatattaagtggctgcactttgagtaccctgttaattatctcccattttctgctcatttgtcaggcaaaac |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28293 |
gtgactttatagatttcatattaagtggctgcactttgagtaccctgttaattatctcccattttctgctcatttgtcaggcaaaac |
28207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 13 - 199
Target Start/End: Complemental strand, 26396107 - 26395921
Alignment:
| Q |
13 |
gtgagatgaaggctgcaatcgttgaaaaagaagcaatatttgtcactgatgaagttgtggctgcatcaacatcaatggtataaaagtacatattatgtag |
112 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
26396107 |
gtgaaatgaaggctgcaatcgttgaaaaagaagcaatatttgtcactgatgaagttgtcgctgcatcaatatcaatggtataaaagttcatattatgtag |
26396008 |
T |
|
| Q |
113 |
gtgactttatagatttcatattaagtggctgcactttgagtaccctgttaattatctcccattttctgctcatttgtcaggcaaaac |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
26396007 |
gtgactttatagatttcatattaagtggctgcacattgagtaccctgttaattatctcccattttctgttcatctgtcaggcaaaac |
26395921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 275503 - 275446
Alignment:
| Q |
13 |
gtgagatgaaggctgcaatcgttgaaaaagaagcaatatttgtcactgatgaagttgt |
70 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
275503 |
gtgaaatgaaggctgcaatcgttgaaaaagaagcaatatttgtcgctgatgaagttgt |
275446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University