View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16678_low_44 (Length: 208)

Name: NF16678_low_44
Description: NF16678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16678_low_44
NF16678_low_44
[»] chr8 (13 HSPs)
chr8 (18-208)||(25952349-25952521)
chr8 (54-117)||(26774977-26775040)
chr8 (53-111)||(15186191-15186249)
chr8 (126-208)||(27107232-27107314)
chr8 (55-117)||(33541864-33541926)
chr8 (127-208)||(14477195-14477276)
chr8 (127-199)||(15186054-15186126)
chr8 (132-208)||(33541723-33541799)
chr8 (55-117)||(27107393-27107455)
chr8 (57-87)||(21482125-21482155)
chr8 (126-179)||(26775120-26775173)
chr8 (54-87)||(30481064-30481097)
chr8 (55-87)||(40878060-40878092)
[»] chr6 (27 HSPs)
chr6 (55-208)||(13870756-13870909)
chr6 (55-117)||(13056949-13057011)
chr6 (127-208)||(25477172-25477253)
chr6 (128-208)||(22490538-22490618)
chr6 (137-208)||(3632273-3632344)
chr6 (54-117)||(13039508-13039571)
chr6 (55-117)||(3630360-3630422)
chr6 (126-208)||(10584023-10584105)
chr6 (130-208)||(12161889-12161967)
chr6 (127-208)||(13039652-13039733)
chr6 (132-208)||(14466237-14466312)
chr6 (137-208)||(3630199-3630270)
chr6 (54-117)||(24338966-24339029)
chr6 (55-109)||(3632440-3632494)
chr6 (126-208)||(24338783-24338865)
chr6 (103-208)||(13057068-13057173)
chr6 (57-113)||(10583884-10583940)
chr6 (126-208)||(20220025-20220107)
chr6 (126-208)||(22114009-22114091)
chr6 (55-117)||(22490415-22490477)
chr6 (55-89)||(26944926-26944960)
chr6 (82-117)||(20219939-20219974)
chr6 (127-185)||(3028209-3028267)
chr6 (54-87)||(3390131-3390164)
chr6 (55-87)||(3396095-3396127)
chr6 (55-91)||(12162024-12162060)
chr6 (54-86)||(15719422-15719454)
[»] chr5 (16 HSPs)
chr5 (110-208)||(20042896-20042994)
chr5 (55-115)||(20044757-20044817)
chr5 (126-208)||(10474658-10474740)
chr5 (130-208)||(2723833-2723911)
chr5 (126-208)||(24126718-24126800)
chr5 (55-117)||(695631-695693)
chr5 (58-111)||(2723698-2723751)
chr5 (55-116)||(24126579-24126640)
chr5 (128-208)||(20044874-20044954)
chr5 (140-208)||(39398327-39398395)
chr5 (126-208)||(17072745-17072827)
chr5 (55-117)||(20042770-20042832)
chr5 (72-117)||(17072619-17072664)
chr5 (132-208)||(695758-695833)
chr5 (55-87)||(1190122-1190154)
chr5 (61-89)||(34531171-34531199)
[»] chr1 (21 HSPs)
chr1 (106-208)||(17186465-17186567)
chr1 (56-117)||(25251753-25251814)
chr1 (55-117)||(25248992-25249054)
chr1 (55-117)||(17323785-17323847)
chr1 (55-114)||(17186629-17186688)
chr1 (137-208)||(31489788-31489859)
chr1 (55-110)||(50249078-50249133)
chr1 (126-208)||(18839449-18839531)
chr1 (126-208)||(50248909-50248991)
chr1 (130-207)||(25251613-25251690)
chr1 (55-117)||(31489727-31489789)
chr1 (127-208)||(17323928-17324009)
chr1 (57-117)||(18839311-18839371)
chr1 (126-207)||(25248852-25248933)
chr1 (55-87)||(17352797-17352829)
chr1 (55-87)||(31423403-31423435)
chr1 (55-89)||(16430823-16430857)
chr1 (55-89)||(18801075-18801109)
chr1 (137-197)||(43104032-43104092)
chr1 (55-87)||(50079351-50079383)
chr1 (55-87)||(50308045-50308077)
[»] chr7 (20 HSPs)
chr7 (115-199)||(22828977-22829061)
chr7 (107-199)||(20091885-20091977)
chr7 (55-117)||(22829109-22829171)
chr7 (55-117)||(27833131-27833193)
chr7 (55-113)||(39146466-39146524)
chr7 (54-117)||(21677795-21677858)
chr7 (126-208)||(21679899-21679981)
chr7 (54-114)||(24748345-24748405)
chr7 (129-208)||(44724454-44724533)
chr7 (127-208)||(27832969-27833050)
chr7 (128-203)||(24748469-24748544)
chr7 (129-208)||(39146322-39146401)
chr7 (55-117)||(44724330-44724392)
chr7 (163-208)||(25276050-25276095)
chr7 (57-117)||(21679759-21679819)
chr7 (126-208)||(21677938-21678020)
chr7 (55-87)||(11355010-11355042)
chr7 (52-87)||(24817877-24817912)
chr7 (53-87)||(4296423-4296457)
chr7 (55-87)||(20137636-20137668)
[»] chr4 (15 HSPs)
chr4 (126-208)||(38270321-38270403)
chr4 (55-117)||(47564498-47564560)
chr4 (103-208)||(3937543-3937648)
chr4 (55-114)||(6132647-6132706)
chr4 (55-117)||(38270481-38270543)
chr4 (128-208)||(2891234-2891314)
chr4 (55-100)||(27498965-27499010)
chr4 (130-208)||(6132793-6132871)
chr4 (55-96)||(18409844-18409885)
chr4 (54-87)||(18537997-18538030)
chr4 (55-91)||(2891134-2891170)
chr4 (55-89)||(18535303-18535337)
chr4 (82-115)||(16186335-16186368)
chr4 (55-92)||(33415982-33416019)
chr4 (55-87)||(37313568-37313600)
[»] chr3 (33 HSPs)
chr3 (126-208)||(28137628-28137710)
chr3 (55-117)||(28137769-28137831)
chr3 (57-117)||(1627178-1627238)
chr3 (137-208)||(36011680-36011751)
chr3 (126-208)||(1627016-1627098)
chr3 (55-117)||(28100536-28100598)
chr3 (126-208)||(53468788-53468870)
chr3 (55-114)||(5927265-5927324)
chr3 (55-117)||(7754063-7754125)
chr3 (55-117)||(43423938-43424000)
chr3 (103-199)||(23633279-23633375)
chr3 (55-115)||(36011527-36011587)
chr3 (127-208)||(4663762-4663843)
chr3 (53-89)||(13420693-13420729)
chr3 (152-208)||(28180892-28180948)
chr3 (129-205)||(43421751-43421826)
chr3 (55-107)||(43421919-43421971)
chr3 (55-89)||(562214-562248)
chr3 (54-108)||(8183196-8183250)
chr3 (55-89)||(25635122-25635156)
chr3 (130-208)||(28100374-28100452)
chr3 (126-208)||(28102335-28102417)
chr3 (55-95)||(23633160-23633200)
chr3 (54-89)||(25633230-25633265)
chr3 (161-208)||(54884034-54884081)
chr3 (55-89)||(23636727-23636761)
chr3 (57-110)||(28102504-28102558)
chr3 (54-87)||(3306517-3306550)
chr3 (55-92)||(53468965-53469002)
chr3 (137-197)||(1673828-1673888)
chr3 (55-87)||(3314404-3314436)
chr3 (55-87)||(6231169-6231201)
chr3 (55-87)||(47149425-47149457)
[»] chr2 (17 HSPs)
chr2 (127-207)||(15539811-15539891)
chr2 (55-117)||(15539973-15540035)
chr2 (55-117)||(22163423-22163485)
chr2 (128-208)||(11739895-11739975)
chr2 (54-117)||(3021838-3021901)
chr2 (138-208)||(22163282-22163352)
chr2 (126-208)||(34979914-34979996)
chr2 (54-117)||(11740016-11740079)
chr2 (53-116)||(14836969-14837032)
chr2 (137-208)||(14837123-14837193)
chr2 (131-208)||(3022006-3022083)
chr2 (131-207)||(38019986-38020062)
chr2 (57-117)||(34980076-34980136)
chr2 (55-87)||(31733252-31733284)
chr2 (55-87)||(38414535-38414567)
chr2 (180-208)||(44289403-44289431)
chr2 (55-87)||(45239468-45239500)
[»] scaffold0964 (1 HSPs)
scaffold0964 (55-89)||(1274-1308)
[»] scaffold0004 (1 HSPs)
scaffold0004 (55-87)||(79661-79693)


Alignment Details
Target: chr8 (Bit Score: 120; Significance: 1e-61; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 25952349 - 25952521
Alignment:
Q  18 tctttcatatatattggaacttttagcaaatgagtgatgttgtgaaagtgactcaaaattgaagaaattggaattatggaagcagaaaatcggtggccga 117  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||                  ||||||||||||||||||    
T  25952349 tctttcatatatattggaacttttagtaaatgagtgatgttgtgaaagtgactcaaaattgaag------------------cagaaaatcggtggccga 25952430  T
Q  118 atggtgcaattcggtggctgattttgacaacaggaaataaacaagaaacgtattttcgagcttagatttgttccagttttattgaggattc 208  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  25952431 atggtgcaattcgggggctgattttgacaacaggaaataaacaagaaacgtattttcgggcttagatttgttccagttttattgaggattc 25952521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 54 - 117
Target Start/End: Original strand, 26774977 - 26775040
Alignment:
Q  54 atgttgtgaaagtgactcaaaattgaagaaattggaattatggaagcagaaaatcggtggccga 117  Q
    |||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  26774977 atgttgtgaaagtgcctcaaaattgaagaaattggaattctggtagcagaaaatcggtggccga 26775040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 53 - 111
Target Start/End: Complemental strand, 15186249 - 15186191
Alignment:
Q  53 gatgttgtgaaagtgactcaaaattgaagaaattggaattatggaagcagaaaatcggt 111  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  15186249 gatgttgtgaaagtgactcaaaattgaagaaataggaattatggaagcaaaaaatcggt 15186191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 126 - 208
Target Start/End: Complemental strand, 27107314 - 27107232
Alignment:
Q  126 attcggtggctgattttgacaacaggaaataaacaagaaacgtattttcgagcttagatttgttccagttttattgaggattc 208  Q
    ||||| |||| |||||||||| ||| |||||||  ||||||||||||||| || |||||||||||||||||||||||||||||    
T  27107314 attcgatggccgattttgacagcagaaaataaaatagaaacgtattttcgggcctagatttgttccagttttattgaggattc 27107232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 55 - 117
Target Start/End: Complemental strand, 33541926 - 33541864
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattggaattatggaagcagaaaatcggtggccga 117  Q
    ||||||||||||| ||||||||| |||||||||||||| ||||||| ||||||||||||||||    
T  33541926 tgttgtgaaagtgcctcaaaattaaagaaattggaattctggaagctgaaaatcggtggccga 33541864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 127 - 208
Target Start/End: Original strand, 14477195 - 14477276
Alignment:
Q  127 ttcggtggctgattttgacaacaggaaataaacaagaaacgtattttcgagcttagatttgttccagttttattgaggattc 208  Q
    ||||||||| |||||||||| || ||||||||  ||||||||||||||| |  ||||||| |||||||||||||||||||||    
T  14477195 ttcggtggccgattttgacagcaagaaataaaatagaaacgtattttcgggtctagatttattccagttttattgaggattc 14477276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 127 - 199
Target Start/End: Complemental strand, 15186126 - 15186054
Alignment:
Q  127 ttcggtggctgattttgacaacaggaaataaacaagaaacgtattttcgagcttagatttgttccagttttat 199  Q
    ||||||||| |||||||||| |||||||||||  ||||||||||||||| || ||||||||||||| ||||||    
T  15186126 ttcggtggccgattttgacagcaggaaataaaacagaaacgtattttcgggcctagatttgttccaattttat 15186054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 132 - 208
Target Start/End: Complemental strand, 33541799 - 33541723
Alignment:
Q  132 tggctgattttgacaacaggaaataaacaagaaacgtattttcgagcttagatttgttccagttttattgaggattc 208  Q
    |||| |||||||||| ||| |||||||  ||||||||||||||| || ||||||||||| |||||||||||||||||    
T  33541799 tggccgattttgacagcagaaaataaaacagaaacgtattttcgggcctagatttgttcgagttttattgaggattc 33541723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 55 - 117
Target Start/End: Complemental strand, 27107455 - 27107393
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattggaattatggaagcagaaaatcggtggccga 117  Q
    ||||||||||||| |||||||||||||||||| ||||| ||||||| |||||||| |||||||    
T  27107455 tgttgtgaaagtgcctcaaaattgaagaaattagaattctggaagctgaaaatcgatggccga 27107393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 87
Target Start/End: Original strand, 21482125 - 21482155
Alignment:
Q  57 ttgtgaaagtgactcaaaattgaagaaattg 87  Q
    |||||||||||||||||||||||||||||||    
T  21482125 ttgtgaaagtgactcaaaattgaagaaattg 21482155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 179
Target Start/End: Original strand, 26775120 - 26775173
Alignment:
Q  126 attcggtggctgattttgacaacaggaaataaacaagaaacgtattttcgagct 179  Q
    |||||||||| |||||||||| ||||||||| |  ||||||||||||| |||||    
T  26775120 attcggtggccgattttgacagcaggaaatagaacagaaacgtatttttgagct 26775173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 87
Target Start/End: Complemental strand, 30481097 - 30481064
Alignment:
Q  54 atgttgtgaaagtgactcaaaattgaagaaattg 87  Q
    ||||||||||||||||||||||||| ||||||||    
T  30481097 atgttgtgaaagtgactcaaaattggagaaattg 30481064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 87
Target Start/End: Complemental strand, 40878092 - 40878060
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattg 87  Q
    |||||||||||||||||||||||| ||||||||    
T  40878092 tgttgtgaaagtgactcaaaattggagaaattg 40878060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 6e-39; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 55 - 208
Target Start/End: Complemental strand, 13870909 - 13870756
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattggaattatggaagcagaaaatcggtggccgaatggtgcaattcggtggctgattttgacaacaggaaa 154  Q
    ||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||| ||| |       ||||||||| |||||||||| |||||||    
T  13870909 tgttgtgaaagtgccttaaaattgaagaaattggaattttggaagcagaaaatcggtggtcgattttcagggttcggtggccgattttgacagcaggaaa 13870810  T
Q  155 taaacaagaaacgtattttcgagcttagatttgttccagttttattgaggattc 208  Q
    ||||  ||||||||||||||| || |||||||||||||||||||||||||||||    
T  13870809 taaaatagaaacgtattttcgggcctagatttgttccagttttattgaggattc 13870756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 55 - 117
Target Start/End: Original strand, 13056949 - 13057011
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattggaattatggaagcagaaaatcggtggccga 117  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||    
T  13056949 tgttgtgaaagtgcctcaaaattgaagaaattggaattctggaagcagaaaattggtggccga 13057011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 127 - 208
Target Start/End: Original strand, 25477172 - 25477253
Alignment:
Q  127 ttcggtggctgattttgacaacaggaaataaacaagaaacgtattttcgagcttagatttgttccagttttattgaggattc 208  Q
    ||||||||| |||||||||| ||| |||||||  |||||| |||||||| || |||||||||||||||||||||||||||||    
T  25477172 ttcggtggccgattttgacatcagaaaataaaacagaaacatattttcgggcctagatttgttccagttttattgaggattc 25477253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 128 - 208
Target Start/End: Original strand, 22490538 - 22490618
Alignment:
Q  128 tcggtggctgattttgacaacaggaaataaacaagaaacgtattttcgagcttagatttgttccagttttattgaggattc 208  Q
    ||||||||||||||||| | ||| |||||||  ||||||||||||||| |  |||||||||||||||||||||||||||||    
T  22490538 tcggtggctgattttgatagcagaaaataaaacagaaacgtattttcgggtctagatttgttccagttttattgaggattc 22490618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 137 - 208
Target Start/End: Complemental strand, 3632344 - 3632273
Alignment:
Q  137 gattttgacaacaggaaataaacaagaaacgtattttcgagcttagatttgttccagttttattgaggattc 208  Q
    |||||||||| ||| |||||||  ||||||||||||||| || |||||||||||||||||||||||||||||    
T  3632344 gattttgacagcagaaaataaaatagaaacgtattttcgggcctagatttgttccagttttattgaggattc 3632273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 54 - 117
Target Start/End: Original strand, 13039508 - 13039571
Alignment:
Q  54 atgttgtgaaagtgactcaaaattgaagaaattggaattatggaagcagaaaatcggtggccga 117  Q
    |||||||||||||| ||||||||||||||||||| |||| ||||||||||||| ||||||||||    
T  13039508 atgttgtgaaagtgcctcaaaattgaagaaattgaaattctggaagcagaaaaccggtggccga 13039571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 55 - 117
Target Start/End: Complemental strand, 3630422 - 3630360
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattggaattatggaagcagaaaatcggtggccga 117  Q
    ||||||||||||| |||||||||||||||||||||||| | ||||| ||||||||||||||||    
T  3630422 tgttgtgaaagtgcctcaaaattgaagaaattggaattctagaagctgaaaatcggtggccga 3630360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 126 - 208
Target Start/End: Original strand, 10584023 - 10584105
Alignment:
Q  126 attcggtggctgattttgacaacaggaaataaacaagaaacgtattttcgagcttagatttgttccagttttattgaggattc 208  Q
    |||||||||| |||||||||| ||| |||||||  || ||| |||||||| || |||||||||||||||||||||||||||||    
T  10584023 attcggtggccgattttgacagcagaaaataaaacagtaacatattttcgggcctagatttgttccagttttattgaggattc 10584105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 130 - 208
Target Start/End: Complemental strand, 12161967 - 12161889
Alignment:
Q  130 ggtggctgattttgacaacaggaaataaacaagaaacgtattttcgagcttagatttgttccagttttattgaggattc 208  Q
    |||| |||||||||||| ||| |||||||  |||||| |||||||| || |||||||||||||||||||||||||||||    
T  12161967 ggtgactgattttgacagcagaaaataaaacagaaacatattttcgggcctagatttgttccagttttattgaggattc 12161889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 127 - 208
Target Start/End: Original strand, 13039652 - 13039733
Alignment:
Q  127 ttcggtggctgattttgacaacaggaaataaacaagaaacgtattttcgagcttagatttgttccagttttattgaggattc 208  Q
    |||| |||| |||||||||||||| |||||||  | |||||||||||||  | |||||||||||||||||||||||||||||    
T  13039652 ttcgatggccgattttgacaacagaaaataaaacataaacgtattttcggacctagatttgttccagttttattgaggattc 13039733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 132 - 208
Target Start/End: Original strand, 14466237 - 14466312
Alignment:
Q  132 tggctgattttgacaacaggaaataaacaagaaacgtattttcgagcttagatttgttccagttttattgaggattc 208  Q
    |||||||||| |||| |||||||||||  |||||||| |||||| || |||||||||||||||||||||||||||||    
T  14466237 tggctgatttcgacagcaggaaataaaacagaaacgtcttttcg-gcctagatttgttccagttttattgaggattc 14466312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 137 - 208
Target Start/End: Complemental strand, 3630270 - 3630199
Alignment:
Q  137 gattttgacaacaggaaataaacaagaaacgtattttcgagcttagatttgttccagttttattgaggattc 208  Q
    |||||||||| ||| |||||||  ||||||||||||| | || |||||||||||||||||||||||||||||    
T  3630270 gattttgacagcagaaaataaaacagaaacgtatttttgggcctagatttgttccagttttattgaggattc 3630199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 54 - 117
Target Start/End: Complemental strand, 24339029 - 24338966
Alignment:
Q  54 atgttgtgaaagtgactcaaaattgaagaaattggaattatggaagcagaaaatcggtggccga 117  Q
    |||||||||||||| ||||||||||||||||||| |||| ||||||  ||||||||||||||||    
T  24339029 atgttgtgaaagtgcctcaaaattgaagaaattgaaattctggaagatgaaaatcggtggccga 24338966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 55 - 109
Target Start/End: Complemental strand, 3632494 - 3632440
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattggaattatggaagcagaaaatcg 109  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||    
T  3632494 tgttgtgaaagtgcctcaaaattgaagaaattggaattctggaagctgaaaatcg 3632440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 126 - 208
Target Start/End: Complemental strand, 24338865 - 24338783
Alignment:
Q  126 attcggtggctgattttgacaacaggaaataaacaagaaacgtattttcgagcttagatttgttccagttttattgaggattc 208  Q
    |||||||||| |||||||||| ||  |||||||  | ||||||||||||| || ||||||||||||||||||||||| |||||    
T  24338865 attcggtggccgattttgacaccaaaaaataaaacataaacgtattttcgggcctagatttgttccagttttattgaagattc 24338783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 208
Target Start/End: Original strand, 13057068 - 13057173
Alignment:
Q  103 aaaatcggtggccgaatggtgcaattcggtggctgattttgacaacaggaaataaacaagaaacgtattttcgagcttagatttgttccagttttattga 202  Q
    ||||||||||||||| |  || | |||| ||||  ||||||| |  || |||||||  ||||||||||||||| || ||||||||||||| |||||||||    
T  13057068 aaaatcggtggccgatttatggatttcgatggccaattttgatagtagaaaataaaacagaaacgtattttcgggcctagatttgttccaattttattga 13057167  T
Q  203 ggattc 208  Q
    ||||||    
T  13057168 ggattc 13057173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 10583884 - 10583940
Alignment:
Q  57 ttgtgaaagtgactcaaaattgaagaaattggaattatggaagcagaaaatcggtgg 113  Q
    ||||||||||| || ||||||||||||||||||||| ||||||| ||||| ||||||    
T  10583884 ttgtgaaagtgccttaaaattgaagaaattggaattctggaagctgaaaaccggtgg 10583940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 126 - 208
Target Start/End: Original strand, 20220025 - 20220107
Alignment:
Q  126 attcggtggctgattttgacaacaggaaataaacaagaaacgtattttcgagcttagatttgttccagttttattgaggattc 208  Q
    |||| ||||| |||||||||| ||| |||||||  | |||| |||||||| |  ||||||||||||||||||||||| |||||    
T  20220025 attccgtggccgattttgacagcagaaaataaaacaaaaacatattttcgggtctagatttgttccagttttattgatgattc 20220107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 126 - 208
Target Start/End: Original strand, 22114009 - 22114091
Alignment:
Q  126 attcggtggctgattttgacaacaggaaataaacaagaaacgtattttcgagcttagatttgttccagttttattgaggattc 208  Q
    |||| ||||| |||||||||| ||| |||||||  | |||| |||||||| |  ||||||||||||||||||||||| |||||    
T  22114009 attccgtggccgattttgacagcagaaaataaaacaaaaacatattttcgggtctagatttgttccagttttattgatgattc 22114091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 55 - 117
Target Start/End: Original strand, 22490415 - 22490477
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattggaattatggaagcagaaaatcggtggccga 117  Q
    |||| |||||||| |||||||||||||||||| ||||| || |||| |||||||| |||||||    
T  22490415 tgttatgaaagtgcctcaaaattgaagaaattagaattctgaaagctgaaaatcgatggccga 22490477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 55 - 89
Target Start/End: Original strand, 26944926 - 26944960
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattgga 89  Q
    |||||||||||||||||||||||||||||||||||    
T  26944926 tgttgtgaaagtgactcaaaattgaagaaattgga 26944960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 82 - 117
Target Start/End: Original strand, 20219939 - 20219974
Alignment:
Q  82 aaattggaattatggaagcagaaaatcggtggccga 117  Q
    ||||||||||||||||||| ||||||||||||||||    
T  20219939 aaattggaattatggaagctgaaaatcggtggccga 20219974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 3028267 - 3028209
Alignment:
Q  127 ttcggtggctgattttgacaacaggaaataaacaagaaacgtattttcgagcttagatt 185  Q
    |||||||||||| ||||||| ||||| |||||  | |||||||||||||||| ||||||    
T  3028267 ttcggtggctgaatttgacagcaggatataaaacataaacgtattttcgagcctagatt 3028209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 87
Target Start/End: Original strand, 3390131 - 3390164
Alignment:
Q  54 atgttgtgaaagtgactcaaaattgaagaaattg 87  Q
    ||||||||||||||||||||||||| ||||||||    
T  3390131 atgttgtgaaagtgactcaaaattggagaaattg 3390164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 87
Target Start/End: Original strand, 3396095 - 3396127
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattg 87  Q
    |||||||||||||||||||||||| ||||||||    
T  3396095 tgttgtgaaagtgactcaaaattggagaaattg 3396127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 91
Target Start/End: Complemental strand, 12162060 - 12162024
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattggaat 91  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  12162060 tgttgtgaaagtgcctcaaaattaaagaaattggaat 12162024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 86
Target Start/End: Original strand, 15719422 - 15719454
Alignment:
Q  54 atgttgtgaaagtgactcaaaattgaagaaatt 86  Q
    ||||||||||||||||||||||||| |||||||    
T  15719422 atgttgtgaaagtgactcaaaattggagaaatt 15719454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 1e-27; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 110 - 208
Target Start/End: Original strand, 20042896 - 20042994
Alignment:
Q  110 gtggccgaatggtgcaattcggtggctgattttgacaacaggaaataaacaagaaacgtattttcgagcttagatttgttccagttttattgaggattc 208  Q
    ||||||||||| |||||||||||||| |||||||| | |||||||||||  ||||||||||||||| || ||||||| |||||||||||||||||||||    
T  20042896 gtggccgaatgctgcaattcggtggccgattttgagatcaggaaataaaacagaaacgtattttcgggcctagatttattccagttttattgaggattc 20042994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 55 - 115
Target Start/End: Original strand, 20044757 - 20044817
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattggaattatggaagcagaaaatcggtggcc 115  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  20044757 tgttgtgaaagtgactcaaaattgaagaaattggaattctggaagcagaaaatcggtggcc 20044817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 126 - 208
Target Start/End: Complemental strand, 10474740 - 10474658
Alignment:
Q  126 attcggtggctgattttgacaacaggaaataaacaagaaacgtattttcgagcttagatttgttccagttttattgaggattc 208  Q
    |||||||||| |||||||||| ||| |||||||  ||||||||||||||| || |||||||||||||||||||||||||||||    
T  10474740 attcggtggccgattttgacagcagaaaataaaacagaaacgtattttcgggcctagatttgttccagttttattgaggattc 10474658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 130 - 208
Target Start/End: Original strand, 2723833 - 2723911
Alignment:
Q  130 ggtggctgattttgacaacaggaaataaacaagaaacgtattttcgagcttagatttgttccagttttattgaggattc 208  Q
    |||||| |||||||||| |||||||||||  ||||||||||||||| || |||||||||||||  ||||||||||||||    
T  2723833 ggtggccgattttgacagcaggaaataaaacagaaacgtattttcgggcctagatttgttccaagtttattgaggattc 2723911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 126 - 208
Target Start/End: Original strand, 24126718 - 24126800
Alignment:
Q  126 attcggtggctgattttgacaacaggaaataaacaagaaacgtattttcgagcttagatttgttccagttttattgaggattc 208  Q
    |||||||||| |||||||||| ||| |||||||  | ||| |||||||||||  |||||||||||||||||||||||||||||    
T  24126718 attcggtggccgattttgacagcagaaaataaaacataaatgtattttcgagtctagatttgttccagttttattgaggattc 24126800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 55 - 117
Target Start/End: Original strand, 695631 - 695693
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattggaattatggaagcagaaaatcggtggccga 117  Q
    ||||||||||||| ||||||||||||||||||| |||| ||||||| |||||| |||||||||    
T  695631 tgttgtgaaagtgcctcaaaattgaagaaattgaaattctggaagctgaaaattggtggccga 695693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 2723698 - 2723751
Alignment:
Q  58 tgtgaaagtgactcaaaattgaagaaattggaattatggaagcagaaaatcggt 111  Q
    |||||||||| |||||||||||||||||||||||| ||||||| ||||||||||    
T  2723698 tgtgaaagtgcctcaaaattgaagaaattggaattctggaagctgaaaatcggt 2723751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 55 - 116
Target Start/End: Original strand, 24126579 - 24126640
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattggaattatggaagcagaaaatcggtggccg 116  Q
    ||||||||||||| |||||||||||||||||||||||| | ||||| |||||| ||||||||    
T  24126579 tgttgtgaaagtgtctcaaaattgaagaaattggaattctagaagctgaaaattggtggccg 24126640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 208
Target Start/End: Original strand, 20044874 - 20044954
Alignment:
Q  128 tcggtggctgattttgacaacaggaaataaacaagaaacgtattttcgagcttagatttgttccagttttattgaggattc 208  Q
    |||||||| ||||||||||  ||| ||||||  ||||| ||||||||| |  |||||||||||||||||||||||||||||    
T  20044874 tcggtggccgattttgacagtagggaataaaacagaaatgtattttcgggtctagatttgttccagttttattgaggattc 20044954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 140 - 208
Target Start/End: Complemental strand, 39398395 - 39398327
Alignment:
Q  140 tttgacaacaggaaataaacaagaaacgtattttcgagcttagatttgttccagttttattgaggattc 208  Q
    ||||||| ||| |||||||  | ||||||||||||| || |||||||||||||||||||||||||||||    
T  39398395 tttgacagcagaaaataaaacataaacgtattttcgggcctagatttgttccagttttattgaggattc 39398327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 208
Target Start/End: Original strand, 17072745 - 17072827
Alignment:
Q  126 attcggtggctgattttgacaacaggaaataaacaagaaacgtattttcgagcttagatttgttccagttttattgaggattc 208  Q
    |||||||||| ||||||||||  || |||||||  | ||||||||||||  || ||||||||||||| |||||||||||||||    
T  17072745 attcggtggccgattttgacagtagaaaataaaacataaacgtattttcaggcctagatttgttccatttttattgaggattc 17072827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 55 - 117
Target Start/End: Original strand, 20042770 - 20042832
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattggaattatggaagcagaaaatcggtggccga 117  Q
    |||||||||||||| | ||||||||||||||||||||| |||||| ||||||| | |||||||    
T  20042770 tgttgtgaaagtgatttaaaattgaagaaattggaattctggaagaagaaaattgatggccga 20042832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 72 - 117
Target Start/End: Original strand, 17072619 - 17072664
Alignment:
Q  72 aaaattgaagaaattggaattatggaagcagaaaatcggtggccga 117  Q
    |||||| |||||||||||||| || |||| ||||||||||||||||    
T  17072619 aaaattaaagaaattggaattttgaaagctgaaaatcggtggccga 17072664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 208
Target Start/End: Original strand, 695758 - 695833
Alignment:
Q  132 tggctgattttgacaacaggaaataaacaagaaacgtattttcgagcttagatttgttccagttttattgaggattc 208  Q
    |||| ||||||| |||||| ||||| |  | |||||||||| | ||| |||||||||||||||||||||||| ||||    
T  695758 tggccgattttgccaacagaaaatataacataaacgtattt-caagcctagatttgttccagttttattgagaattc 695833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 87
Target Start/End: Complemental strand, 1190154 - 1190122
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattg 87  Q
    |||||||||||||||||||||||| ||||||||    
T  1190154 tgttgtgaaagtgactcaaaattggagaaattg 1190122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 89
Target Start/End: Complemental strand, 34531199 - 34531171
Alignment:
Q  61 gaaagtgactcaaaattgaagaaattgga 89  Q
    |||||||||||||||||||||||||||||    
T  34531199 gaaagtgactcaaaattgaagaaattgga 34531171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 1e-27; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 106 - 208
Target Start/End: Complemental strand, 17186567 - 17186465
Alignment:
Q  106 atcggtggccgaatggtgcaattcggtggctgattttgacaacaggaaataaacaagaaacgtattttcgagcttagatttgttccagttttattgagga 205  Q
    |||||||| ||||||||||||||| ||||| |||||||||| ||||||||||| |||||||||||||| |  | || |||||||||||||||||||||||    
T  17186567 atcggtggtcgaatggtgcaattcagtggccgattttgacagcaggaaataaaaaagaaacgtatttttggacctaaatttgttccagttttattgagga 17186468  T
Q  206 ttc 208  Q
    |||    
T  17186467 ttc 17186465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 56 - 117
Target Start/End: Complemental strand, 25251814 - 25251753
Alignment:
Q  56 gttgtgaaagtgactcaaaattgaagaaattggaattatggaagcagaaaatcggtggccga 117  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  25251814 gttgtgaaagtgcctcaaaattgaagaaattggaattctggaagcagaaaatcggtggccga 25251753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 55 - 117
Target Start/End: Complemental strand, 25249054 - 25248992
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattggaattatggaagcagaaaatcggtggccga 117  Q
    |||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  25249054 tgttgtgatagtgcctcaaaattgaagaaattggaattctggaagcagaaaatcggtggccga 25248992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 55 - 117
Target Start/End: Original strand, 17323785 - 17323847
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattggaattatggaagcagaaaatcggtggccga 117  Q
    ||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||| ||||    
T  17323785 tgttgtgaaagtgcctcaaaattgaagaaattggaattctggaagtagaaaatcggtgaccga 17323847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 55 - 114
Target Start/End: Complemental strand, 17186688 - 17186629
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattggaattatggaagcagaaaatcggtggc 114  Q
    ||||||||||| ||||||||||||||||||||| || | |||||||||||||||||||||    
T  17186688 tgttgtgaaagcgactcaaaattgaagaaattgaaaatctggaagcagaaaatcggtggc 17186629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 137 - 208
Target Start/End: Original strand, 31489788 - 31489859
Alignment:
Q  137 gattttgacaacaggaaataaacaagaaacgtattttcgagcttagatttgttccagttttattgaggattc 208  Q
    |||||||||| ||| |||||||  ||||||||||||||| || ||||||||||| |||||||||||||||||    
T  31489788 gattttgacagcagaaaataaaacagaaacgtattttcgggcctagatttgttctagttttattgaggattc 31489859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 55 - 110
Target Start/End: Complemental strand, 50249133 - 50249078
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattggaattatggaagcagaaaatcgg 110  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||    
T  50249133 tgttgtgaaagtgcctcaaaattgaagaaattggaattctggaagctgaaaatcgg 50249078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 126 - 208
Target Start/End: Original strand, 18839449 - 18839531
Alignment:
Q  126 attcggtggctgattttgacaacaggaaataaacaagaaacgtattttcgagcttagatttgttccagttttattgaggattc 208  Q
    |||||||||| |||||||||| ||| |||| ||  ||||||||||||||| || ||||||||||  |||||||||||||||||    
T  18839449 attcggtggccgattttgacagcagaaaattaaacagaaacgtattttcgggcctagatttgttatagttttattgaggattc 18839531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 126 - 208
Target Start/End: Complemental strand, 50248991 - 50248909
Alignment:
Q  126 attcggtggctgattttgacaacaggaaataaacaagaaacgtattttcgagcttagatttgttccagttttattgaggattc 208  Q
    |||||||||| |||||||||| ||| || ||||  |||||| ||||| || || |||||||||||||||||||||||||||||    
T  50248991 attcggtggccgattttgacagcagaaattaaaacagaaacatatttacgggcctagatttgttccagttttattgaggattc 50248909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 130 - 207
Target Start/End: Complemental strand, 25251690 - 25251613
Alignment:
Q  130 ggtggctgattttgacaacaggaaataaacaagaaacgtattttcgagcttagatttgttccagttttattgaggatt 207  Q
    |||||| |||||| ||| ||| | ||||| |||||||||||||||| || ||||||||||||||||||||||| ||||    
T  25251690 ggtggccgattttaacagcagaatataaaaaagaaacgtattttcgggcctagatttgttccagttttattgaagatt 25251613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 55 - 117
Target Start/End: Original strand, 31489727 - 31489789
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattggaattatggaagcagaaaatcggtggccga 117  Q
    ||||| ||||||| || ||||||||||||||||||||| |||||||||||||| || ||||||    
T  31489727 tgttgcgaaagtgccttaaaattgaagaaattggaattctggaagcagaaaattgggggccga 31489789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 208
Target Start/End: Original strand, 17323928 - 17324009
Alignment:
Q  127 ttcggtggctgattttgacaacaggaaataaacaagaaacgtattttcgagcttagatttgttccagttttattgaggattc 208  Q
    |||||||||  ||||||||| ||| || ||||  ||||||||| ||||| || || ||||||||||||||||||||||||||    
T  17323928 ttcggtggccaattttgacagcagaaattaaaacagaaacgtactttcgtgcctaaatttgttccagttttattgaggattc 17324009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 57 - 117
Target Start/End: Original strand, 18839311 - 18839371
Alignment:
Q  57 ttgtgaaagtgactcaaaattgaagaaattggaattatggaagcagaaaatcggtggccga 117  Q
    ||||||||||| |||||||||||| ||||||||||| ||| | |||||||||| |||||||    
T  18839311 ttgtgaaagtgcctcaaaattgaataaattggaattctggtaacagaaaatcgatggccga 18839371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 207
Target Start/End: Complemental strand, 25248933 - 25248852
Alignment:
Q  126 attcggtggctgattttgacaacaggaaataaacaagaaacgtattttcgagcttagatttgttccagttttattgaggatt 207  Q
    ||||||| || ||||||  || |||||||||||  |||||| || ||||| || ||||||||||| ||||||||||||||||    
T  25248933 attcggtagccgatttttgcagcaggaaataaaacagaaacatactttcgggcctagatttgttcaagttttattgaggatt 25248852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 87
Target Start/End: Original strand, 17352797 - 17352829
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattg 87  Q
    |||||||||||||||||||||||||||||||||    
T  17352797 tgttgtgaaagtgactcaaaattgaagaaattg 17352829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 87
Target Start/End: Complemental strand, 31423435 - 31423403
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattg 87  Q
    |||||||||||||||||||||||||||||||||    
T  31423435 tgttgtgaaagtgactcaaaattgaagaaattg 31423403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 89
Target Start/End: Original strand, 16430823 - 16430857
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattgga 89  Q
    |||||||||||||||||||||||||| ||||||||    
T  16430823 tgttgtgaaagtgactcaaaattgaataaattgga 16430857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 89
Target Start/End: Complemental strand, 18801109 - 18801075
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattgga 89  Q
    ||||||||||||||||||||||||||| |||||||    
T  18801109 tgttgtgaaagtgactcaaaattgaaggaattgga 18801075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 197
Target Start/End: Original strand, 43104032 - 43104092
Alignment:
Q  137 gattttgacaacaggaaataaacaagaaacgtattttcgagcttagatttgttccagtttt 197  Q
    ||||||| |||||  |||||||  |||||| |||||| | |||||||||||||||||||||    
T  43104032 gattttgccaacataaaataaaacagaaacatatttttgggcttagatttgttccagtttt 43104092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 87
Target Start/End: Complemental strand, 50079383 - 50079351
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattg 87  Q
    ||||||||||||||||| |||||||||||||||    
T  50079383 tgttgtgaaagtgactccaaattgaagaaattg 50079351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 87
Target Start/End: Complemental strand, 50308077 - 50308045
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattg 87  Q
    |||||||||||||||||||||||| ||||||||    
T  50308077 tgttgtgaaagtgactcaaaattggagaaattg 50308045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 5e-24; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 115 - 199
Target Start/End: Complemental strand, 22829061 - 22828977
Alignment:
Q  115 cgaatggtgcaattcggtggctgattttgacaacaggaaataaacaagaaacgtattttcgagcttagatttgttccagttttat 199  Q
    ||||||||||||||||||||| |||||| ||| |||||||||||  ||||||||||||||| || ||||||||||||||||||||    
T  22829061 cgaatggtgcaattcggtggccgattttaacagcaggaaataaaacagaaacgtattttcgggcctagatttgttccagttttat 22828977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 107 - 199
Target Start/End: Complemental strand, 20091977 - 20091885
Alignment:
Q  107 tcggtggccgaatggtgcaattcggtggctgattttgacaacaggaaataaacaagaaacgtattttcgagcttagatttgttccagttttat 199  Q
    |||||||||||||||||| ||| |||||| |||||||||| |||||||||||  ||||||||||||||  || ||||||||||||| ||||||    
T  20091977 tcggtggccgaatggtgccatttggtggccgattttgacagcaggaaataaaacagaaacgtattttcaggcctagatttgttccaattttat 20091885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 55 - 117
Target Start/End: Complemental strand, 22829171 - 22829109
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattggaattatggaagcagaaaatcggtggccga 117  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||    
T  22829171 tgttgtgaaagtgactcaaaattgaagaaattggaattctggaagtagaaaatcagtggccga 22829109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 55 - 117
Target Start/End: Complemental strand, 27833193 - 27833131
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattggaattatggaagcagaaaatcggtggccga 117  Q
    ||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  27833193 tgttgtgaaagtgcctcaaaattgaagaaattagaattctggaagcagaaaatcggtggccga 27833131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 55 - 113
Target Start/End: Complemental strand, 39146524 - 39146466
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattggaattatggaagcagaaaatcggtgg 113  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  39146524 tgttgtgaaagtgactcaaaattgaagaaattggaattttggaagcagaaaaccggtgg 39146466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 54 - 117
Target Start/End: Original strand, 21677795 - 21677858
Alignment:
Q  54 atgttgtgaaagtgactcaaaattgaagaaattggaattatggaagcagaaaatcggtggccga 117  Q
    |||||||||||||| |||||||||||||||||||||||  ||||||| ||||||||||||||||    
T  21677795 atgttgtgaaagtgcctcaaaattgaagaaattggaatcctggaagctgaaaatcggtggccga 21677858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 126 - 208
Target Start/End: Original strand, 21679899 - 21679981
Alignment:
Q  126 attcggtggctgattttgacaacaggaaataaacaagaaacgtattttcgagcttagatttgttccagttttattgaggattc 208  Q
    |||| ||||| |||||||||| ||| |||||||  ||||||||||||||| || ||||||||||||||||| |||||||||||    
T  21679899 attcagtggccgattttgacagcagaaaataaaatagaaacgtattttcgggcctagatttgttccagtttaattgaggattc 21679981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 54 - 114
Target Start/End: Original strand, 24748345 - 24748405
Alignment:
Q  54 atgttgtgaaagtgactcaaaattgaagaaattggaattatggaagcagaaaatcggtggc 114  Q
    ||||||||||||||||||||||||||| ||||| ||||| ||||||| |||||||||||||    
T  24748345 atgttgtgaaagtgactcaaaattgaaaaaattagaattctggaagctgaaaatcggtggc 24748405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 129 - 208
Target Start/End: Original strand, 44724454 - 44724533
Alignment:
Q  129 cggtggctgattttgacaacaggaaataaacaagaaacgtattttcgagcttagatttgttccagttttattgaggattc 208  Q
    |||||||||||||||| | ||| |||||||  |||||||||||||||  | ||||||||||| |||||||||||||||||    
T  44724454 cggtggctgattttgatagcagaaaataaaacagaaacgtattttcggacctagatttgttctagttttattgaggattc 44724533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 127 - 208
Target Start/End: Complemental strand, 27833050 - 27832969
Alignment:
Q  127 ttcggtggctgattttgacaacaggaaataaacaagaaacgtattttcgagcttagatttgttccagttttattgaggattc 208  Q
    |||||||||  ||||||||| ||| |||||||  ||||| ||||||||| || ||||||||||||||||||||||| |||||    
T  27833050 ttcggtggccaattttgacagcagaaaataaaacagaaatgtattttcgggcctagatttgttccagttttattgatgattc 27832969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 128 - 203
Target Start/End: Original strand, 24748469 - 24748544
Alignment:
Q  128 tcggtggctgattttgacaacaggaaataaacaagaaacgtattttcgagcttagatttgttccagttttattgag 203  Q
    ||||||||  ||||||||| ||| |||||||  |||||||||||||||  | ||||||||||||||||||||||||    
T  24748469 tcggtggccaattttgacagcagaaaataaaacagaaacgtattttcggccctagatttgttccagttttattgag 24748544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 129 - 208
Target Start/End: Complemental strand, 39146401 - 39146322
Alignment:
Q  129 cggtggctgattttgacaacaggaaataaacaagaaacgtattttcgagcttagatttgttccagttttattgaggattc 208  Q
    ||||||| |||||||||| ||| |||||||  ||||||||||||||   | ||||||||||||| |||||||||||||||    
T  39146401 cggtggccgattttgacagcagaaaataaaacagaaacgtattttcagacctagatttgttccaattttattgaggattc 39146322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 55 - 117
Target Start/End: Original strand, 44724330 - 44724392
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattggaattatggaagcagaaaatcggtggccga 117  Q
    ||||||||| ||| |||||||||||| |||||| |||| ||||||| ||||||||||||||||    
T  44724330 tgttgtgaacgtgcctcaaaattgaaaaaattgaaattctggaagctgaaaatcggtggccga 44724392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 208
Target Start/End: Original strand, 25276050 - 25276095
Alignment:
Q  163 aaacgtattttcgagcttagatttgttccagttttattgaggattc 208  Q
    ||||||||||||| || |||||||||||||||||||||||||||||    
T  25276050 aaacgtattttcgggcctagatttgttccagttttattgaggattc 25276095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 57 - 117
Target Start/End: Original strand, 21679759 - 21679819
Alignment:
Q  57 ttgtgaaagtgactcaaaattgaagaaattggaattatggaagcagaaaatcggtggccga 117  Q
    ||||||||||| ||||||| | |||||||||||||| ||||||| ||| ||||||||||||    
T  21679759 ttgtgaaagtgcctcaaaaattaagaaattggaattctggaagctgaacatcggtggccga 21679819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 126 - 208
Target Start/End: Original strand, 21677938 - 21678020
Alignment:
Q  126 attcggtggctgattttgacaacaggaaataaacaagaaacgtattttcgagcttagatttgttccagttttattgaggattc 208  Q
    |||| ||| |||| ||||||| ||| |||||||  | |||  |||||||| ||||||||||||| ||||||||||||||||||    
T  21677938 attcagtgactgaatttgacagcagaaaataaaacaaaaaaatattttcgggcttagatttgtttcagttttattgaggattc 21678020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 87
Target Start/End: Original strand, 11355010 - 11355042
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattg 87  Q
    |||||||||||||||||||||||||||||||||    
T  11355010 tgttgtgaaagtgactcaaaattgaagaaattg 11355042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 52 - 87
Target Start/End: Complemental strand, 24817912 - 24817877
Alignment:
Q  52 tgatgttgtgaaagtgactcaaaattgaagaaattg 87  Q
    ||||||||||||||||||||||||||| ||||||||    
T  24817912 tgatgttgtgaaagtgactcaaaattggagaaattg 24817877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 87
Target Start/End: Complemental strand, 4296457 - 4296423
Alignment:
Q  53 gatgttgtgaaagtgactcaaaattgaagaaattg 87  Q
    |||||||||||||||||||||||||| ||||||||    
T  4296457 gatgttgtgaaagtgactcaaaattggagaaattg 4296423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 87
Target Start/End: Complemental strand, 20137668 - 20137636
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattg 87  Q
    |||||||||||||||||||||||| ||||||||    
T  20137668 tgttgtgaaagtgactcaaaattggagaaattg 20137636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 8e-23; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 126 - 208
Target Start/End: Complemental strand, 38270403 - 38270321
Alignment:
Q  126 attcggtggctgattttgacaacaggaaataaacaagaaacgtattttcgagcttagatttgttccagttttattgaggattc 208  Q
    |||||||||| |||||||||| ||| |||||||  ||||||||||||||| || |||||||||||||||||||||||||||||    
T  38270403 attcggtggccgattttgacagcagaaaataaaacagaaacgtattttcgggcctagatttgttccagttttattgaggattc 38270321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 55 - 117
Target Start/End: Original strand, 47564498 - 47564560
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattggaattatggaagcagaaaatcggtggccga 117  Q
    ||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  47564498 tgttgtgaaagtgcctcaaaattgaagaaattagaattctggaagcagaaaatcggtggccga 47564560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 103 - 208
Target Start/End: Complemental strand, 3937648 - 3937543
Alignment:
Q  103 aaaatcggtggccgaatggtgcaattcggtggctgattttgacaacaggaaataaacaagaaacgtattttcgagcttagatttgttccagttttattga 202  Q
    |||||||||||||||||  | ||   ||||||| |||||||||| |||||||||||  ||||||||||||||| || ||||||| ||||||||||||| |    
T  3937648 aaaatcggtggccgaattctacagcacggtggccgattttgacagcaggaaataaaacagaaacgtattttcgggcctagattttttccagttttattta 3937549  T
Q  203 ggattc 208  Q
    ||||||    
T  3937548 ggattc 3937543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 55 - 114
Target Start/End: Original strand, 6132647 - 6132706
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattggaattatggaagcagaaaatcggtggc 114  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||    
T  6132647 tgttgtgaaagtgcctcaaaattgaagaaattggaattctggaagctgaaaatcggtggc 6132706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 55 - 117
Target Start/End: Complemental strand, 38270543 - 38270481
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattggaattatggaagcagaaaatcggtggccga 117  Q
    ||||||||||||| ||||||||||||||||||| |||| ||| ||||||||||||||||||||    
T  38270543 tgttgtgaaagtgcctcaaaattgaagaaattgaaattctggtagcagaaaatcggtggccga 38270481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 208
Target Start/End: Original strand, 2891234 - 2891314
Alignment:
Q  128 tcggtggctgattttgacaacaggaaataaacaagaaacgtattttcgagcttagatttgttccagttttattgaggattc 208  Q
    |||||||| |||||||||| ||| |||||||  ||||||||||||  | |  |||||||||||||||||||||||||||||    
T  2891234 tcggtggccgattttgacagcagaaaataaaacagaaacgtatttatgggactagatttgttccagttttattgaggattc 2891314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 100
Target Start/End: Original strand, 27498965 - 27499010
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattggaattatggaagc 100  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||    
T  27498965 tgttgtgaaagtgcctcaaaattgaagaaattggaattctggaagc 27499010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 130 - 208
Target Start/End: Original strand, 6132793 - 6132871
Alignment:
Q  130 ggtggctgattttgacaacaggaaataaacaagaaacgtattttcgagcttagatttgttccagttttattgaggattc 208  Q
    |||||| |||||||||| ||  |||||||  | ||||||||||||  || ||||||||||| |||||||||||||||||    
T  6132793 ggtggccgattttgacagcataaaataaaacataaacgtattttcatgcctagatttgttctagttttattgaggattc 6132871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 96
Target Start/End: Complemental strand, 18409885 - 18409844
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattggaattatgg 96  Q
    ||||| ||||||||||||||||||||||||||||| ||||||    
T  18409885 tgttgagaaagtgactcaaaattgaagaaattggagttatgg 18409844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 87
Target Start/End: Complemental strand, 18538030 - 18537997
Alignment:
Q  54 atgttgtgaaagtgactcaaaattgaagaaattg 87  Q
    ||||||||||||||||||||||||||||||||||    
T  18538030 atgttgtgaaagtgactcaaaattgaagaaattg 18537997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 91
Target Start/End: Original strand, 2891134 - 2891170
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattggaat 91  Q
    ||||||||||||| |||||||||||||||||||||||    
T  2891134 tgttgtgaaagtgcctcaaaattgaagaaattggaat 2891170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 89
Target Start/End: Complemental strand, 18535337 - 18535303
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattgga 89  Q
    ||||||||||||||||||| |||||||||||||||    
T  18535337 tgttgtgaaagtgactcaatattgaagaaattgga 18535303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 82 - 115
Target Start/End: Complemental strand, 16186368 - 16186335
Alignment:
Q  82 aaattggaattatggaagcagaaaatcggtggcc 115  Q
    ||||||||||| ||||||||||||||||||||||    
T  16186368 aaattggaattctggaagcagaaaatcggtggcc 16186335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 92
Target Start/End: Complemental strand, 33416019 - 33415982
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattggaatt 92  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  33416019 tgttgtgaaagtgactcaaaattggagaaattgaaatt 33415982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 87
Target Start/End: Complemental strand, 37313600 - 37313568
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattg 87  Q
    |||||||||||||||||||||||| ||||||||    
T  37313600 tgttgtgaaagtgactcaaaattggagaaattg 37313568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 8e-23; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 126 - 208
Target Start/End: Complemental strand, 28137710 - 28137628
Alignment:
Q  126 attcggtggctgattttgacaacaggaaataaacaagaaacgtattttcgagcttagatttgttccagttttattgaggattc 208  Q
    |||||||||| |||||||||| ||| |||||||  ||||||||||||||| || |||||||||||||||||||||||||||||    
T  28137710 attcggtggccgattttgacagcagaaaataaaacagaaacgtattttcgggcctagatttgttccagttttattgaggattc 28137628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 55 - 117
Target Start/End: Complemental strand, 28137831 - 28137769
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattggaattatggaagcagaaaatcggtggccga 117  Q
    ||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||    
T  28137831 tgttgtgaaagtgcctcaaaattgaagaaattggaattctggaagtagaaaatcggtggccga 28137769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 57 - 117
Target Start/End: Complemental strand, 1627238 - 1627178
Alignment:
Q  57 ttgtgaaagtgactcaaaattgaagaaattggaattatggaagcagaaaatcggtggccga 117  Q
    ||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  1627238 ttgtgaaagtgcctcaaaattgaagaaattggaattctggaagctgaaaatcggtggccga 1627178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 137 - 208
Target Start/End: Original strand, 36011680 - 36011751
Alignment:
Q  137 gattttgacaacaggaaataaacaagaaacgtattttcgagcttagatttgttccagttttattgaggattc 208  Q
    |||||||||||||  |||||||  ||||||||||||||| || |||||||||||||||||||||||||||||    
T  36011680 gattttgacaacataaaataaaacagaaacgtattttcgggcctagatttgttccagttttattgaggattc 36011751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 126 - 208
Target Start/End: Complemental strand, 1627098 - 1627016
Alignment:
Q  126 attcggtggctgattttgacaacaggaaataaacaagaaacgtattttcgagcttagatttgttccagttttattgaggattc 208  Q
    |||||||||| || ||||||| ||  |||||||  |||||||||||||||||| ||||||||||||||||||||||| |||||    
T  1627098 attcggtggcagactttgacagcaaaaaataaaacagaaacgtattttcgagcctagatttgttccagttttattgatgattc 1627016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 55 - 117
Target Start/End: Complemental strand, 28100598 - 28100536
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattggaattatggaagcagaaaatcggtggccga 117  Q
    ||||||||||||| |||||||||||||||||||||||| |||||| ||||||||| |||||||    
T  28100598 tgttgtgaaagtgcctcaaaattgaagaaattggaattctggaagtagaaaatcgatggccga 28100536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 126 - 208
Target Start/End: Complemental strand, 53468870 - 53468788
Alignment:
Q  126 attcggtggctgattttgacaacaggaaataaacaagaaacgtattttcgagcttagatttgttccagttttattgaggattc 208  Q
    |||||||||| |||||| ||||||| |||||||  |||||| |||||||| || ||||||||||||| |||||||||||||||    
T  53468870 attcggtggccgattttaacaacagaaaataaaacagaaacatattttcgggcctagatttgttccatttttattgaggattc 53468788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 55 - 114
Target Start/End: Complemental strand, 5927324 - 5927265
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattggaattatggaagcagaaaatcggtggc 114  Q
    ||||||||||||| || ||||||||||||||||||||| ||||||| |||||||||||||    
T  5927324 tgttgtgaaagtgccttaaaattgaagaaattggaattttggaagctgaaaatcggtggc 5927265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 55 - 117
Target Start/End: Original strand, 7754063 - 7754125
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattggaattatggaagcagaaaatcggtggccga 117  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||  ||||||| |||||||    
T  7754063 tgttgtgaaagtggctcaaaattgaagaaattggaattctggaagctaaaaatcgctggccga 7754125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 55 - 117
Target Start/End: Complemental strand, 43424000 - 43423938
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattggaattatggaagcagaaaatcggtggccga 117  Q
    ||||||||||||| |||||||||||||||||||||||| ||| || |||||| ||||||||||    
T  43424000 tgttgtgaaagtgcctcaaaattgaagaaattggaattctggtagtagaaaaccggtggccga 43423938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 199
Target Start/End: Original strand, 23633279 - 23633375
Alignment:
Q  103 aaaatcggtggccgaatggtgcaattcggtggctgattttgacaacaggaaataaacaagaaacgtattttcgagcttagatttgttccagttttat 199  Q
    ||||||||||||||||||| | ||||||| | | || |||| || ||| ||||| |  |||||||||||||||||| ||||||||||||| ||||||    
T  23633279 aaaatcggtggccgaatggaggaattcggggtccgaatttgccagcagaaaatataacagaaacgtattttcgagcctagatttgttccaattttat 23633375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 115
Target Start/End: Original strand, 36011527 - 36011587
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattggaattatggaagcagaaaatcggtggcc 115  Q
    ||||||||||||| |||||||||||||||||||||| | ||||||  ||||||||||||||    
T  36011527 tgttgtgaaagtgcctcaaaattgaagaaattggaaatctggaaggtgaaaatcggtggcc 36011587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 208
Target Start/End: Original strand, 4663762 - 4663843
Alignment:
Q  127 ttcggtggctgattttgacaacaggaaataaacaagaaacgtattttcgagcttagatttgttccagttttattgaggattc 208  Q
    ||||||||| |||||| |||  || |||||||  ||||||||||||||  |||||||||||||| ||||||||||| |||||    
T  4663762 ttcggtggccgatttttacagtagaaaataaaacagaaacgtattttcaggcttagatttgttctagttttattgaagattc 4663843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 89
Target Start/End: Complemental strand, 13420729 - 13420693
Alignment:
Q  53 gatgttgtgaaagtgactcaaaattgaagaaattgga 89  Q
    |||||||||||||||||||||||||||||||||||||    
T  13420729 gatgttgtgaaagtgactcaaaattgaagaaattgga 13420693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 152 - 208
Target Start/End: Original strand, 28180892 - 28180948
Alignment:
Q  152 aaataaacaagaaacgtattttcgagcttagatttgttccagttttattgaggattc 208  Q
    |||||||  ||||||||||||||| || | |||||||||||||||||||||||||||    
T  28180892 aaataaaatagaaacgtattttcgggcctcgatttgttccagttttattgaggattc 28180948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 205
Target Start/End: Complemental strand, 43421826 - 43421751
Alignment:
Q  129 cggtggctgattttgacaacaggaaataaacaagaaacgtattttcgagcttagatttgttccagttttattgagga 205  Q
    ||||||| |||||||||| ||| |||||||  |||| |||||||| | || ||||||||||||||||||||||||||    
T  43421826 cggtggccgattttgacagcagaaaataaaatagaa-cgtatttttgggcctagatttgttccagttttattgagga 43421751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 43421971 - 43421919
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattggaattatggaagcagaaaat 107  Q
    ||||||||||||| ||||||||||||||||||||||||  || ||||||||||    
T  43421971 tgttgtgaaagtgcctcaaaattgaagaaattggaattcaggtagcagaaaat 43421919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 55 - 89
Target Start/End: Complemental strand, 562248 - 562214
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattgga 89  Q
    |||||||||||||||||||||||||||||||||||    
T  562248 tgttgtgaaagtgactcaaaattgaagaaattgga 562214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 54 - 108
Target Start/End: Complemental strand, 8183250 - 8183196
Alignment:
Q  54 atgttgtgaaagtgactcaaaattgaagaaattggaattatggaagcagaaaatc 108  Q
    |||||||||||||| ||||||||||||||||||| |||| ||  |||||||||||    
T  8183250 atgttgtgaaagtgcctcaaaattgaagaaattgaaattctgatagcagaaaatc 8183196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 55 - 89
Target Start/End: Original strand, 25635122 - 25635156
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattgga 89  Q
    |||||||||||||||||||||||||||||||||||    
T  25635122 tgttgtgaaagtgactcaaaattgaagaaattgga 25635156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 130 - 208
Target Start/End: Complemental strand, 28100452 - 28100374
Alignment:
Q  130 ggtggctgattttgacaacaggaaataaacaagaaacgtattttcgagcttagatttgttccagttttattgaggattc 208  Q
    |||||| |||||||||| ||| |||||||  |  |||||||||||| || | |||||||||||||||||| ||||||||    
T  28100452 ggtggccgattttgacagcagaaaataaaacactaacgtattttcgggcctggatttgttccagttttatagaggattc 28100374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 126 - 208
Target Start/End: Complemental strand, 28102417 - 28102335
Alignment:
Q  126 attcggtggctgattttgacaacaggaaataaacaagaaacgtattttcgagcttagatttgttccagttttattgaggattc 208  Q
    |||| ||||| |||||||||| ||| |||||||  |  |||||||||||| || | |||||||||||||||||| ||||||||    
T  28102417 attcagtggccgattttgacagcagaaaataaaacactaacgtattttcgggcctggatttgttccagttttatagaggattc 28102335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 23633160 - 23633200
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattggaattatg 95  Q
    |||||||||||||||||||||||||||||||| || |||||    
T  23633160 tgttgtgaaagtgactcaaaattgaagaaattagagttatg 23633200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 54 - 89
Target Start/End: Original strand, 25633230 - 25633265
Alignment:
Q  54 atgttgtgaaagtgactcaaaattgaagaaattgga 89  Q
    ||||||||||||||| ||||||||||||||||||||    
T  25633230 atgttgtgaaagtgattcaaaattgaagaaattgga 25633265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 161 - 208
Target Start/End: Original strand, 54884034 - 54884081
Alignment:
Q  161 agaaacgtattttcgagcttagatttgttccagttttattgaggattc 208  Q
    ||||||||||||||| || || |||||||||| |||||||||||||||    
T  54884034 agaaacgtattttcgggcctaaatttgttccaattttattgaggattc 54884081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 89
Target Start/End: Original strand, 23636727 - 23636761
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattgga 89  Q
    |||||||||||||||||||||||| ||||||||||    
T  23636727 tgttgtgaaagtgactcaaaattggagaaattgga 23636761  T

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Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 110
Target Start/End: Complemental strand, 28102558 - 28102504
Alignment:
Q  57 ttgtgaaagtgactcaaaattgaagaaa-ttggaattatggaagcagaaaatcgg 110  Q
    ||||||||||| |||||||||||| ||| |||||||| || ||||||||||||||    
T  28102558 ttgtgaaagtgcctcaaaattgaataaatttggaattctgaaagcagaaaatcgg 28102504  T

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Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 87
Target Start/End: Original strand, 3306517 - 3306550
Alignment:
Q  54 atgttgtgaaagtgactcaaaattgaagaaattg 87  Q
    ||||||||||||||||||||||||| ||||||||    
T  3306517 atgttgtgaaagtgactcaaaattggagaaattg 3306550  T

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Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 92
Target Start/End: Complemental strand, 53469002 - 53468965
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattggaatt 92  Q
    ||||||||||||| |||||||||||||||||| |||||    
T  53469002 tgttgtgaaagtgcctcaaaattgaagaaattagaatt 53468965  T

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Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 197
Target Start/End: Original strand, 1673828 - 1673888
Alignment:
Q  137 gattttgacaacaggaaataaacaagaaacgtattttcgagcttagatttgttccagtttt 197  Q
    ||||||| || ||| |||||||  ||||| ||||||||| |||||||||||||| ||||||    
T  1673828 gattttgccaccagaaaataaaacagaaatgtattttcgggcttagatttgttctagtttt 1673888  T

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Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 87
Target Start/End: Original strand, 3314404 - 3314436
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattg 87  Q
    |||||||||||||| ||||||||||||||||||    
T  3314404 tgttgtgaaagtgattcaaaattgaagaaattg 3314436  T

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Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 87
Target Start/End: Original strand, 6231169 - 6231201
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattg 87  Q
    |||||||||||||||||||||||| ||||||||    
T  6231169 tgttgtgaaagtgactcaaaattggagaaattg 6231201  T

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Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 87
Target Start/End: Complemental strand, 47149457 - 47149425
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattg 87  Q
    |||||||||||||||||||||||| ||||||||    
T  47149457 tgttgtgaaagtgactcaaaattggagaaattg 47149425  T

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Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 127 - 207
Target Start/End: Complemental strand, 15539891 - 15539811
Alignment:
Q  127 ttcggtggctgattttgacaacaggaaataaacaagaaacgtattttcgagcttagatttgttccagttttattgaggatt 207  Q
    ||||||||| |||||||||| ||| |||||||  ||||||||||||||| || ||||||||||||||||||||||||||||    
T  15539891 ttcggtggccgattttgacagcagaaaataaaacagaaacgtattttcgggcctagatttgttccagttttattgaggatt 15539811  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 55 - 117
Target Start/End: Complemental strand, 15540035 - 15539973
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattggaattatggaagcagaaaatcggtggccga 117  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||    
T  15540035 tgttgtgaaagtgcctcaaaattgaagaaattggaattctggaagcagaaaatcgatggccga 15539973  T

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Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 55 - 117
Target Start/End: Complemental strand, 22163485 - 22163423
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattggaattatggaagcagaaaatcggtggccga 117  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  22163485 tgttgtgaaagtgcctcaaaattgaagaaattggaattctggaagctgaaaatcggtggccga 22163423  T

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Target: chr2; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 128 - 208
Target Start/End: Complemental strand, 11739975 - 11739895
Alignment:
Q  128 tcggtggctgattttgacaacaggaaataaacaagaaacgtattttcgagcttagatttgttccagttttattgaggattc 208  Q
    |||||||| |||||||||| ||| |||||||  ||||||||||||||| |  |||||||||||||||||||||||||||||    
T  11739975 tcggtggccgattttgacagcagaaaataaaacagaaacgtattttcgtgtctagatttgttccagttttattgaggattc 11739895  T

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Target: chr2; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 54 - 117
Target Start/End: Original strand, 3021838 - 3021901
Alignment:
Q  54 atgttgtgaaagtgactcaaaattgaagaaattggaattatggaagcagaaaatcggtggccga 117  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||| ||||| ||||||||    
T  3021838 atgttgtgaaagtgcctcaaaattgaagaaattggaattctggaagcaggaaatccgtggccga 3021901  T

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Target: chr2; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 22163352 - 22163282
Alignment:
Q  138 attttgacaacaggaaataaacaagaaacgtattttcgagcttagatttgttccagttttattgaggattc 208  Q
    ||||||||| |||||||||||  ||||| ||||||||| || |||||||||||||||||||||||||||||    
T  22163352 attttgacagcaggaaataaaacagaaatgtattttcgggcctagatttgttccagttttattgaggattc 22163282  T

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Target: chr2; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 126 - 208
Target Start/End: Complemental strand, 34979996 - 34979914
Alignment:
Q  126 attcggtggctgattttgacaacaggaaataaacaagaaacgtattttcgagcttagatttgttccagttttattgaggattc 208  Q
    |||||||||| |||||| ||| ||| |||||||  |||||||||| |||| || |||||||||||||||||||||||||||||    
T  34979996 attcggtggccgattttcacagcagaaaataaaacagaaacgtatcttcgggcctagatttgttccagttttattgaggattc 34979914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 54 - 117
Target Start/End: Complemental strand, 11740079 - 11740016
Alignment:
Q  54 atgttgtgaaagtgactcaaaattgaagaaattggaattatggaagcagaaaatcggtggccga 117  Q
    |||||||||||||| |||||||||||||||||||||||| || |||  ||||||||||||||||    
T  11740079 atgttgtgaaagtgcctcaaaattgaagaaattggaattctgaaagttgaaaatcggtggccga 11740016  T

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Target: chr2; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 53 - 116
Target Start/End: Original strand, 14836969 - 14837032
Alignment:
Q  53 gatgttgtgaaagtgactcaaaattgaagaaattggaattatggaagcagaaaatcggtggccg 116  Q
    ||||||||||||||| |||||||||||||||||| ||||| ||||||| |||||| ||||||||    
T  14836969 gatgttgtgaaagtgcctcaaaattgaagaaattagaattctggaagctgaaaattggtggccg 14837032  T

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Target: chr2; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 137 - 208
Target Start/End: Original strand, 14837123 - 14837193
Alignment:
Q  137 gattttgacaacaggaaataaacaagaaacgtattttcgagcttagatttgttccagttttattgaggattc 208  Q
    |||||||||| ||| ||| ||| || ||||||||||||||||||||||||| ||||||||||||||||||||    
T  14837123 gattttgacagcagaaaaaaaa-aacaaacgtattttcgagcttagatttgctccagttttattgaggattc 14837193  T

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Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 131 - 208
Target Start/End: Original strand, 3022006 - 3022083
Alignment:
Q  131 gtggctgattttgacaacaggaaataaacaagaaacgtattttcgagcttagatttgttccagttttattgaggattc 208  Q
    ||||| |||||||| | |||||||||||  ||||||||||||||| || ||||||||||  |||||||||||||||||    
T  3022006 gtggccgattttgatagcaggaaataaaacagaaacgtattttcgggcctagatttgttggagttttattgaggattc 3022083  T

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Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 207
Target Start/End: Original strand, 38019986 - 38020062
Alignment:
Q  131 gtggctgattttgacaacaggaaataaacaagaaacgtattttcgagcttagatttgttccagttttattgaggatt 207  Q
    ||||| ||||||||||  || |||||||  ||||||||||||||| || ||||||| ||||||||||||||||||||    
T  38019986 gtggccgattttgacagtagaaaataaaacagaaacgtattttcgggcctagatttattccagttttattgaggatt 38020062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 57 - 117
Target Start/End: Complemental strand, 34980136 - 34980076
Alignment:
Q  57 ttgtgaaagtgactcaaaattgaagaaattggaattatggaagcagaaaatcggtggccga 117  Q
    |||||||| || |||||||||||||||||| ||||| | ||||| ||||||||||||||||    
T  34980136 ttgtgaaaatgcctcaaaattgaagaaattagaattctagaagctgaaaatcggtggccga 34980076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 87
Target Start/End: Complemental strand, 31733284 - 31733252
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattg 87  Q
    |||||||||||||||||||||||| ||||||||    
T  31733284 tgttgtgaaagtgactcaaaattggagaaattg 31733252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 87
Target Start/End: Complemental strand, 38414567 - 38414535
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattg 87  Q
    |||||||||||||||||||||||| ||||||||    
T  38414567 tgttgtgaaagtgactcaaaattggagaaattg 38414535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 208
Target Start/End: Complemental strand, 44289431 - 44289403
Alignment:
Q  180 tagatttgttccagttttattgaggattc 208  Q
    |||||||||||||||||||||||||||||    
T  44289431 tagatttgttccagttttattgaggattc 44289403  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 87
Target Start/End: Complemental strand, 45239500 - 45239468
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattg 87  Q
    |||||||||||||||||||||||| ||||||||    
T  45239500 tgttgtgaaagtgactcaaaattggagaaattg 45239468  T

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Target: scaffold0964 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0964
Description:

Target: scaffold0964; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 89
Target Start/End: Complemental strand, 1308 - 1274
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattgga 89  Q
    |||||||||||||||||||||||| ||||||||||    
T  1308 tgttgtgaaagtgactcaaaattgtagaaattgga 1274  T

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Target: scaffold0004 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 87
Target Start/End: Original strand, 79661 - 79693
Alignment:
Q  55 tgttgtgaaagtgactcaaaattgaagaaattg 87  Q
    |||||||||||||||||||||||| ||||||||    
T  79661 tgttgtgaaagtgactcaaaattggagaaattg 79693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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