View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16678_low_45 (Length: 203)
Name: NF16678_low_45
Description: NF16678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16678_low_45 |
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Alignment Details
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 11860322 - 11860167
Alignment:
| Q |
1 |
tcctcaatagagctcggaaccgtcttgatccccaaatcatgtagatccaacacgcgtagcgagcacttgaaggtgtcgaagatcttttcacaagttgatg |
100 |
Q |
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| T |
11860322 |
tcctcaatagagctcggaaccgtcttgatccccaaatcatgtagatccaacacgcgtagcgagcacttgaaggtgtcgaagatcttatcacaagttgatg |
11860223 |
T |
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| Q |
101 |
ttgtcacctttacctcatgcggaagctgagggttgttaatgttgtatggcaaaaga |
156 |
Q |
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| T |
11860222 |
ttgtcacctttacctcgtacggaagccgagggttgttaatgttgtatggcaaaaga |
11860167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 11828187 - 11828032
Alignment:
| Q |
1 |
tcctcaatagagctcggaaccgtcttgatccccaaatcatgtagatccaacacgcgtagcgagcacttgaaggtgtcgaagatcttttcacaagttgatg |
100 |
Q |
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|||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| | |
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| T |
11828187 |
tcctcaatagagcttggaactgtcttgatccccaagtcatgtagatccaacacgcgtagcgagtacttgaaggtgtcgaagatcttatcacaagttgacg |
11828088 |
T |
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| Q |
101 |
ttgtcacctttacctcatgcggaagctgagggttgttaatgttgtatggcaaaaga |
156 |
Q |
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| T |
11828087 |
ttgtcatctttacctcgtgcggaagacgagggttgttaatgttgtatggcaaaaga |
11828032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 11902235 - 11902387
Alignment:
| Q |
1 |
tcctcaatagagctcggaaccgtcttgatccccaaatcatgtagatccaacacgcgtagcgagcacttgaaggtgtcgaagatcttttcacaagttgatg |
100 |
Q |
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| T |
11902235 |
tcctcaatagatgttggaaccatcttaatccccaagtcatgtagatccagcacacgtaggga---cttgaaggtgttgaagatcttatcgcatgttgatg |
11902331 |
T |
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| Q |
101 |
ttgtcacctttacctcatgcggaagctgagggttgttaatgttgtatggcaaaaga |
156 |
Q |
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|||||| ||| ||||| || ||||| ||||||||||| || |||| ||||||||| |
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| T |
11902332 |
ttgtcatcttcacctcgtgtggaaggcgagggttgttagtgctgtacggcaaaaga |
11902387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 4 - 156
Target Start/End: Complemental strand, 12039084 - 12038935
Alignment:
| Q |
4 |
tcaatagagctcggaaccgtcttgatccccaaatcatgtagatccaacacgcgtagcgagcacttgaaggtgtcgaagatcttttcacaagttgatgttg |
103 |
Q |
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| T |
12039084 |
tcaatagagctcggaatcgtcttgatccccaagtcatgcatatctaacacgcgcat--agct-ttgaaggtgttaaagatcttatcacaggttgatgttg |
12038988 |
T |
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| Q |
104 |
tcacctttacctcatgcggaagctgagggttgttaatgttgtatggcaaaaga |
156 |
Q |
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||| || |||||| | |||||| ||||||||| | ||||||||||||||||| |
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| T |
12038987 |
tcatctgtacctcgtcaggaagccgagggttgtcagtgttgtatggcaaaaga |
12038935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 150 - 203
Target Start/End: Original strand, 12039213 - 12039266
Alignment:
| Q |
150 |
caaaagacatggatgatttgagttgcctcaaccatcttgacttagaggggtgct |
203 |
Q |
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| T |
12039213 |
caaaagacatggatgatttgagttgcctcaaccatcttgacttagagggatgct |
12039266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 11731967 - 11731828
Alignment:
| Q |
1 |
tcctcaatagagctcggaaccgtcttgatccccaaatcatgtagatccaacacgcgtagcgagcacttgaaggtgtcgaagatcttttcacaagttgatg |
100 |
Q |
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|||||||||||| | || || ||||||||||||| |||||||||||||||||| | | || ||||||||||| ||||||||| ||||| |||| | |
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| T |
11731967 |
tcctcaatagaggttggtacaatcttgatccccaagtcatgtagatccaacacgtgcatgga---cttgaaggtgttgaagatcttatcacaggttggcg |
11731871 |
T |
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| Q |
101 |
ttgtcacctttacctcatgcggaagctgagggttgttaatgtt |
143 |
Q |
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| |||| ||| ||||| || |||||| |||||||||||||||| |
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| T |
11731870 |
tcgtcatcttcacctcgtgtggaagccgagggttgttaatgtt |
11731828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 150 - 195
Target Start/End: Original strand, 11828313 - 11828358
Alignment:
| Q |
150 |
caaaagacatggatgatttgagttgcctcaaccatcttgacttaga |
195 |
Q |
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| T |
11828313 |
caaaagacatggatgatttgagttgccttaaccatcttgacttaga |
11828358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 150 - 203
Target Start/End: Original strand, 11860448 - 11860501
Alignment:
| Q |
150 |
caaaagacatggatgatttgagttgcctcaaccatcttgacttagaggggtgct |
203 |
Q |
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| T |
11860448 |
caaaagacatggacgatttgagttgcctcaatcatcttgacttagagggatgct |
11860501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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