View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16678_low_5 (Length: 598)
Name: NF16678_low_5
Description: NF16678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16678_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 16 - 571
Target Start/End: Complemental strand, 9283827 - 9283261
Alignment:
| Q |
16 |
atgaataaactactttggaagataagagttgaaagggctatctaatgagagacatgaattgaatgaaccactcannnnnnnaggcacaacatcatatgaa |
115 |
Q |
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| T |
9283827 |
atgaataaactactttggaagataagagttgaaagggctatttaatgagagacatgaattgaatgaaccactcatttttttaggcacaacatcatatgaa |
9283728 |
T |
|
| Q |
116 |
tgataaaccatcatcatatgagagacatgaatgaaccgctgctttgggatatgagagttgaaaatgatagttgcagacttgcaacaactatttattttgc |
215 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9283727 |
tgataaaccatcatcatatgagagacatgaatgaaccactgctttgggatatgagagttgaaaatgatagttgcagacttgcaacaactatttattttgc |
9283628 |
T |
|
| Q |
216 |
gttaagtggttatgacacaacagcttacatttacaatattagcagtaaggatgataattagaatctagactttctgtcatatattgttgcagcaactatt |
315 |
Q |
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| T |
9283627 |
gttaagtggttatgacacaacagcttacatttacaatattagcagtaaggatgataattagaatctagactttctgtcatatattgttgcagcaactatt |
9283528 |
T |
|
| Q |
316 |
tatttagctttattttattgttgttgaaacagtcattatgaattacttttgttctctgtacattttggtgtgttttgtctctttgatcgtgtcgaaatgt |
415 |
Q |
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| T |
9283527 |
tatttagctttattttattgttgttgaaacagtcattatgaattacttttgttctctgtacattttggt-agttttgtctctttgatcgtgtcgaaatgt |
9283429 |
T |
|
| Q |
416 |
tgttgctct---atgcggctcgattttgtgatctgctagtcagcttagcttctgtttcatgcatgttt---------------gtatggtgtgagtgacc |
497 |
Q |
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| T |
9283428 |
tgttgctctatgatgcggctcgattttgtgatctgctagtcagcttagcttctgtttcatgcatgtttcagtggttttagcaggtatggtgtcagtggcc |
9283329 |
T |
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| Q |
498 |
ttgagttttggtgtatgtaagagtatttttatttttagtaggttgtgttcttttaacaaaaaagattaaacttg |
571 |
Q |
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| T |
9283328 |
ttgagttttggtgtatgtaagag------tatttttagtaggttgtgttcttttaacaaaaaagattaaacttg |
9283261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 97 - 209
Target Start/End: Original strand, 35051298 - 35051407
Alignment:
| Q |
97 |
aggcacaacatcatatgaatgataaaccatcatcatatgagagacatgaatgaaccgctgctttgggatatgagagttgaaaatgatagttgcagacttg |
196 |
Q |
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| T |
35051298 |
aggcacaacaccatatgattgataaaccatcagaat--gag-gacatgaatgaaccacttctttgggagatgagagttgaagatgattgttgcagacttg |
35051394 |
T |
|
| Q |
197 |
caacaactattta |
209 |
Q |
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|| ||||||||| |
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| T |
35051395 |
cagaaactattta |
35051407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 97 - 209
Target Start/End: Complemental strand, 53324324 - 53324215
Alignment:
| Q |
97 |
aggcacaacatcatatgaatgataaaccatcatcatatgagagacatgaatgaaccgctgctttgggatatgagagttgaaaatgatagttgcagacttg |
196 |
Q |
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|||||||||| ||||||| |||||||||||||| || ||| |||||||||||||| || |||||| | | |||||||||| ||||| ||||||||||| |
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| T |
53324324 |
aggcacaacaccatatgattgataaaccatcataat--gag-gacatgaatgaaccacttctttggaagacgagagttgaagatgattgttgcagacttt |
53324228 |
T |
|
| Q |
197 |
caacaactattta |
209 |
Q |
| |
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|| ||||||||| |
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| T |
53324227 |
cagaaactattta |
53324215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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