View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16678_low_6 (Length: 562)

Name: NF16678_low_6
Description: NF16678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16678_low_6
NF16678_low_6
[»] chr3 (1 HSPs)
chr3 (20-546)||(7926379-7926905)
[»] chr4 (6 HSPs)
chr4 (249-317)||(13311716-13311784)
chr4 (133-193)||(25285247-25285308)
chr4 (426-458)||(12908322-12908354)
chr4 (250-318)||(12908475-12908543)
chr4 (223-318)||(13309821-13309917)
chr4 (330-406)||(48073886-48073962)
[»] chr2 (4 HSPs)
chr2 (262-319)||(37557275-37557332)
chr2 (267-319)||(43127029-43127081)
chr2 (249-302)||(37539173-37539226)
chr2 (141-169)||(8736762-8736790)
[»] chr8 (2 HSPs)
chr8 (259-319)||(29136862-29136922)
chr8 (350-405)||(29136770-29136825)
[»] chr7 (2 HSPs)
chr7 (259-317)||(10454517-10454575)
chr7 (350-406)||(46648871-46648927)
[»] chr1 (1 HSPs)
chr1 (250-319)||(43111518-43111587)


Alignment Details
Target: chr3 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 20 - 546
Target Start/End: Complemental strand, 7926905 - 7926379
Alignment:
Q  20 atcctgcacgcgttgttgagttgaagtttcagaaggagctgtggaaaatgatgaaactgatgagtttaacttgttagcaacaatatctgttctgaaatga 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7926905 atcctgcacgcgttgttgagttgaagtttcagaaggagctgtggaaaatgatgaaactgatgagtttaacttgttagcaacaatatctgttctgaaatga 7926806  T
Q  120 gaaatgattttgcacaactttttaaatggttaacacgatttaaatatgtggttattatgttcagtaaatggttaatgaatataaaaggtggcgaaactct 219  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  7926805 gaaatgatttagcacaactttttaaatggttaacacgatttaaatatgtggttattacgttcagtaaatggttaatgaatataaaaggtgtcgaaactct 7926706  T
Q  220 ttaaccaccaacataatttcactaaaaacgaatttgaacgtgattgaccacaattttcaggtattcaactctaaatgtagttgaacacctgaaaattatg 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7926705 ttaaccaccaacataatttcactaaaaacgaatttgaacgtgattgaccacaattttcaggtattcaactctaaatgtagttgaacacctgaaaattatg 7926606  T
Q  320 ttttgtcgtcaatgagttccgacatctgctatatccattagccatctactatacgtaaataaccacatatttgaattgtgttaaccacttacgttaatgg 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7926605 ttttgtcgtcaatgagttccgacatctgctatatccattagccatctactatacgtaaataaccacatatttgaattgtgttaaccacttacgttaatgg 7926506  T
Q  420 aaaacttgtcaaattttagttgtttaaataacacaactgttccgaaatttctactagatatgccggggtgtccttatcctctaactgaaaatgtatttat 519  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  7926505 aaaacttgtcaaattttagttgttcaaataacacaactgttccgaaatttctactagatatgccgggttgtccttatcctctaactgaaaatgtatttat 7926406  T
Q  520 gaggataatagtaccttcatgtttctt 546  Q
    |||||||||||||||||||||||||||    
T  7926405 gaggataatagtaccttcatgtttctt 7926379  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 249 - 317
Target Start/End: Complemental strand, 13311784 - 13311716
Alignment:
Q  249 gaatttgaacgtgattgaccacaattttcaggtattcaactctaaatgtagttgaacacctgaaaatta 317  Q
    ||||||||| |||||| | ||| ||||| |||| ||||| |||| ||||||||||||||||||||||||    
T  13311784 gaatttgaatgtgattaaacactattttaaggtgttcaattctatatgtagttgaacacctgaaaatta 13311716  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 193
Target Start/End: Complemental strand, 25285308 - 25285247
Alignment:
Q  133 acaactttttaaatggttaacacgatttaaatatgtggtt-attatgttcagtaaatggtta 193  Q
    |||||||||||  |||||||||||||| ||||| |||||| ||||| ||||||| |||||||    
T  25285308 acaactttttatgtggttaacacgattcaaataagtggttaattattttcagtagatggtta 25285247  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 426 - 458
Target Start/End: Complemental strand, 12908354 - 12908322
Alignment:
Q  426 tgtcaaattttagttgtttaaataacacaactg 458  Q
    |||||||||||||||||| ||||||||||||||    
T  12908354 tgtcaaattttagttgttcaaataacacaactg 12908322  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 318
Target Start/End: Original strand, 12908475 - 12908543
Alignment:
Q  250 aatttgaacgtgattgaccacaattttcaggtattcaactctaaatgtagttgaacacctgaaaattat 318  Q
    ||||| || |||||| | ||| ||||| |||| ||||| |||| |||||||||||||||||||| ||||    
T  12908475 aatttaaatgtgattaaacactattttaaggtgttcaattctacatgtagttgaacacctgaaagttat 12908543  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 223 - 318
Target Start/End: Complemental strand, 13309917 - 13309821
Alignment:
Q  223 accaccaacataatttcactaaaaacgaatttgaacgtgattgaccacaattt-tcaggtattcaactctaaatgtagttgaacacctgaaaattat 318  Q
    ||||||||||||| |||| |||  | ||||||||| |||| | | ||| |||| | |||  ||||| |||| |||||||||||||||||||||||||    
T  13309917 accaccaacataaattcattaaccatgaatttgaatgtgactaaacactatttgtaaggggttcaattctacatgtagttgaacacctgaaaattat 13309821  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 330 - 406
Target Start/End: Complemental strand, 48073962 - 48073886
Alignment:
Q  330 aatgagttccgacatctgctatatccattagccatctactatacgtaaataaccacatatttgaattgtgttaacca 406  Q
    |||||||| ||||||||| |  | |||||  |||||||||| |||||| ||||| |||||||||  |||||||||||    
T  48073962 aatgagtttcgacatctggttgacccattgaccatctactaaacgtaattaaccgcatatttgagatgtgttaacca 48073886  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 262 - 319
Target Start/End: Original strand, 37557275 - 37557332
Alignment:
Q  262 attgaccacaattttcaggtattcaactctaaatgtagttgaacacctgaaaattatg 319  Q
    ||||||||||||||||||||  |||| | || | ||||||||||||||||||||||||    
T  37557275 attgaccacaattttcaggtgatcaaatatacacgtagttgaacacctgaaaattatg 37557332  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 267 - 319
Target Start/End: Complemental strand, 43127081 - 43127029
Alignment:
Q  267 ccacaattttcaggtattcaactctaaatgtagttgaacacctgaaaattatg 319  Q
    ||||||||||||||||||| | |||||||| |||||| ||||| |||||||||    
T  43127081 ccacaattttcaggtattctaatctaaatgaagttgagcaccttaaaattatg 43127029  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 302
Target Start/End: Complemental strand, 37539226 - 37539173
Alignment:
Q  249 gaatttgaacgtgattgaccacaattttcaggtattcaactctaaatgtagttg 302  Q
    |||| ||||||||||| ||||||||||||| || ||||| |||| |||||||||    
T  37539226 gaatctgaacgtgattaaccacaattttcaagtgttcaaatctacatgtagttg 37539173  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 141 - 169
Target Start/End: Complemental strand, 8736790 - 8736762
Alignment:
Q  141 ttaaatggttaacacgatttaaatatgtg 169  Q
    |||||||||||||||||||||||||||||    
T  8736790 ttaaatggttaacacgatttaaatatgtg 8736762  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 259 - 319
Target Start/End: Original strand, 29136862 - 29136922
Alignment:
Q  259 gtgattgaccacaattttcaggtattcaactctaaatgtagttgaacacctgaaaattatg 319  Q
    |||||| ||||||||||  |||| ||||| |||| ||||||||||||| ||||||||||||    
T  29136862 gtgattaaccacaatttgaaggtgttcaaatctacatgtagttgaacatctgaaaattatg 29136922  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 405
Target Start/End: Complemental strand, 29136825 - 29136770
Alignment:
Q  350 atatccattagccatctactatacgtaaataaccacatatttgaattgtgttaacc 405  Q
    |||| |||||||||| ||||  |||||| ||||||| |||||||||||||||||||    
T  29136825 atattcattagccatatactgaacgtaattaaccacttatttgaattgtgttaacc 29136770  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 259 - 317
Target Start/End: Complemental strand, 10454575 - 10454517
Alignment:
Q  259 gtgattgaccacaattttcaggtattcaactctaaatgtagttgaacacctgaaaatta 317  Q
    |||||| ||||||||  ||| | |||||| |||||||||| ||||||||||||||||||    
T  10454575 gtgattaaccacaatagtcaagcattcaaatctaaatgtaattgaacacctgaaaatta 10454517  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 350 - 406
Target Start/End: Original strand, 46648871 - 46648927
Alignment:
Q  350 atatccattagccatctactatacgtaaataaccacatatttgaattgtgttaacca 406  Q
    |||| ||||| ||||| | || |||||| |||||| |||||||||||||||||||||    
T  46648871 atattcattaaccatcaattaaacgtaattaaccatatatttgaattgtgttaacca 46648927  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 319
Target Start/End: Original strand, 43111518 - 43111587
Alignment:
Q  250 aatttgaacgtgattgaccacaattttcaggtattcaactctaaatgtagttgaacacctgaaaattatg 319  Q
    |||||||| |||||| || |||||||| |||| ||  |||||| ||||||  ||||||||||||||||||    
T  43111518 aatttgaatgtgattaactacaattttgaggtgtttgactctacatgtaggagaacacctgaaaattatg 43111587  T

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