View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16678_low_7 (Length: 561)
Name: NF16678_low_7
Description: NF16678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16678_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 369; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 11 - 554
Target Start/End: Complemental strand, 11860223 - 11859671
Alignment:
| Q |
11 |
gttgtcacctttacctcatgcggaagctgagggttgttaatgttgtatggcaaaagaatggtccttagtttctttgctttctgaaacaccaaatcaggga |
110 |
Q |
| |
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||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
11860223 |
gttgtcacctttacctcgtacggaagccgagggttgttaatgttgtatggcaaaagaaaggtccttagtttctttgctttctgaaacaccaaatcaggga |
11860124 |
T |
|
| Q |
111 |
tctcacatgtaagatctaaagcaaaatcgaatgaaactcgtagcattccatcttgaactctttcccgcatcacatccatggtgatgttttcgttaccagt |
210 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||| |
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| T |
11860123 |
tctcacatgaaagatctaaagcaaaatcgaacgaaactcgcagcattccatcttgaaccctttcccccatcacatccacggtgatgttttcgttaccagc |
11860024 |
T |
|
| Q |
211 |
gatttcttgcgttgcgagtttatgcatcaaccgattcattctatataagtagttgttc---------ctcacaacaccgcagtactgatggtggtcactt |
301 |
Q |
| |
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|||||||||| |||||||||||||||||||| ||||||||||||| ||| |||||||| |||||||||||||||||| | ||| ||||||| |
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| T |
11860023 |
gatttcttgccttgcgagtttatgcatcaacggattcattctatacaagcagttgttcatattgttcctcacaacaccgcagtaccggaggtagtcactt |
11859924 |
T |
|
| Q |
302 |
tcttttttcgctttatggaaaaccagaggaacgaagtcttcgaaacaagcttgaccaaattgttgttctgggttgacaagaaacccttcagcagtccaga |
401 |
Q |
| |
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|||| || ||||| ||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||| |
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| T |
11859923 |
tcttcttccgcttgatggaaaaccaaaggaacaaagtctttgaaacaagcttgaccaaattgttgttctggattgataagaaacccttcagccgtccaga |
11859824 |
T |
|
| Q |
402 |
gttgaattaatctctctgcatcaatcaaataatcttctggaaacaatgaacaatatgcaaagcataacttctgataagtgggaaaattgtcgtaatagat |
501 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
11859823 |
gttgaatcaatctctctgcatcaatcaaataatcttctggaaacaatgaacaatatgcgaagcataacttctgataagtgggaaggttgtcgtaatagat |
11859724 |
T |
|
| Q |
502 |
aaacttaagcatttccattgcttctggaatccagttgtcaccaccaccaccac |
554 |
Q |
| |
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|||||||||| |||| | ||||| ||||||||||||||||||| |||||||| |
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|
| T |
11859723 |
aaacttaagcgtttctaatgctttcggaatccagttgtcaccacgaccaccac |
11859671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 11 - 561
Target Start/End: Complemental strand, 11828088 - 11827529
Alignment:
| Q |
11 |
gttgtcacctttacctcatgcggaagctgagggttgttaatgttgtatggcaaaagaatggtccttagtttctttgctttctgaaacaccaaatcaggga |
110 |
Q |
| |
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||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
11828088 |
gttgtcatctttacctcgtgcggaagacgagggttgttaatgttgtatggcaaaagaatggtccttagtttctttgctgtctgaaacaccgaatcaggga |
11827989 |
T |
|
| Q |
111 |
tctcacatgtaagatctaaagcaaaatcgaatgaaactcgtagcattccatcttgaactctttcccgcatcacatccatggtgatgttttcgttaccagt |
210 |
Q |
| |
|
||||||||| ||||||||||||||||| ||| |||||||| ||| | || | ||||||| |||| ||||||||||| |||||||||||||| ||||| |
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| T |
11827988 |
tctcacatgaaagatctaaagcaaaattgaacgaaactcgcagcgtcccgccacgaactctctcccccatcacatccacggtgatgttttcgtcaccagc |
11827889 |
T |
|
| Q |
211 |
gatttcttgcgttgcgagtttatgcatcaaccgattcattctatataagtagttgttc---------ctcacaacaccgcagtactgatggtggtcactt |
301 |
Q |
| |
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|||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
11827888 |
aatttcttgtcttgcgagtttatgcattaaccgattcattctatataagtagttgttcatgttgttcctcacaacaccgcagtacttctggtggtcactt |
11827789 |
T |
|
| Q |
302 |
tcttttttcgctttatggaaaaccagaggaacgaagtcttcgaaacaagcttgaccaaattgttgttctgggttgacaagaaacccttcagcagtccaga |
401 |
Q |
| |
|
|||| || ||||| ||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||| ||||||||| |
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|
| T |
11827788 |
tcttcttccgcttgatggaaaaccaaaggaacaaagtcttcgaaacaagcatgaccaaattgttgttctggattgataagaaacccttcaccagtccaga |
11827689 |
T |
|
| Q |
402 |
gttgaattaatctctctgcatcaatcaaataatcttctggaaacaatgaacaatatgcaaagcataacttctgataagtgggaaaattgtcgtaatagat |
501 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||| |
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| T |
11827688 |
gttgaatcaatctctctgcatcaatcaaataatcttctggaaacaatgaacaatatgcaaagcataatttctgataagtgggaagatcgtcgtaatagat |
11827589 |
T |
|
| Q |
502 |
aaacttaagcatttccattgcttctggaatccagttgtcaccaccaccaccactttgctt |
561 |
Q |
| |
|
|| ||| | | |||| | |||||| ||||||| | ||||||||| ||||||| ||||| |
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| T |
11827588 |
aagcttcaccttttctagtgcttcccgaatccattcttcaccaccaacaccactatgctt |
11827529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 11 - 502
Target Start/End: Complemental strand, 12038991 - 12038482
Alignment:
| Q |
11 |
gttgtcacctttacctcatgcggaagctgagggttgttaatgttgtatggcaaaagaatggtccttagtttctttgctttctgaaacaccaaatcaggga |
110 |
Q |
| |
|
||||||| || |||||| | |||||| ||||||||| | ||||||||||||||||||||||||| ||||| || ||||||| |||||| |||| |||| |
|
|
| T |
12038991 |
gttgtcatctgtacctcgtcaggaagccgagggttgtcagtgttgtatggcaaaagaatggtcctcagttttttagctttctcaaacacacaatctggga |
12038892 |
T |
|
| Q |
111 |
tctcacatgtaagatctaaagcaaaatcgaatgaaactcgtagcattccatcttgaactctttcccgcatcacatccatggtgatgttttcgttac---c |
207 |
Q |
| |
|
|| |||| | |||||||||| |||| || |||||||||||||||||||| ||||| | |||| |||| ||||| |||||||||||| || | |
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| T |
12038891 |
tcccacacaacaaatctaaagcataatcaaacgaaactcgtagcattccatcgtgaacaccctcccccatcgaatccacggtgatgttttcacgactgtc |
12038792 |
T |
|
| Q |
208 |
agtgatttcttgcgttgcgagtttatgcatcaaccgattcattctatataagtagttgttcct---cacaacaccgcagtactgatggtggtcactttct |
304 |
Q |
| |
|
|| | || || |||| ||||||||||| ||| | || |||||||||||||||||||| | ||||||||| | ||| || | | || ||||| |
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|
| T |
12038791 |
gatggtgactagccttgcaagtttatgcattaacgggtttattctatataagtagttgttgtttgtcacaacaccaccgtattggttttcgt---tttct |
12038695 |
T |
|
| Q |
305 |
tttttcgctttatggaaaaccagaggaacgaagtcttcgaaacaagcttgaccaaattgttgttctgggttg----------aca-----agaaaccctt |
389 |
Q |
| |
|
| || | ||| ||| ||||||| |||||| ||||| | |||||||||| ||||||||||||||||||| ||| | | ||||| |||| |
|
|
| T |
12038694 |
tcttccacttgatgaaaaaccaaaggaacaaagtcgttgaaacaagctcgaccaaattgttgttctggattgttgtttgaggaaattgttagaaatcctt |
12038595 |
T |
|
| Q |
390 |
cagcagtccagagttgaattaatctctctgcatcaatcaaataatcttctggaaacaatgaacaatatgcaaagcataacttctgataagtgggaaaatt |
489 |
Q |
| |
|
|||| ||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| || |
|
|
| T |
12038594 |
cagccgtccaaagttgaattaatctctcggcatcaattaaataatcttctggaaacaatgaacaatatgcaaagcacaacttctgatacgtgggaagatc |
12038495 |
T |
|
| Q |
490 |
gtcgtaatagata |
502 |
Q |
| |
|
|||||||||||| |
|
|
| T |
12038494 |
ttcgtaatagata |
12038482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 317 - 471
Target Start/End: Original strand, 11902616 - 11902770
Alignment:
| Q |
317 |
tggaaaaccagaggaacgaagtcttcgaaacaagcttgaccaaattgttgttctgggttgacaagaaacccttcagcagtccagagttgaattaatctct |
416 |
Q |
| |
|
|||||||||| ||||| ||||| | |||||||| | ||| ||||||||||| ||| || ||||| ||||||||||||||||||| ||||||||||| |
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|
| T |
11902616 |
tggaaaaccaacggaacaaagtcattgaaacaaggtcgacaaaattgttgttgtggaatggtgagaaatccttcagcagtccagagttcaattaatctct |
11902715 |
T |
|
| Q |
417 |
ctgcatcaatcaaataatcttctggaaacaatgaacaatatgcaaagcataactt |
471 |
Q |
| |
|
| |||||||||||||||||| |||||||||||||||||||||||| |||||||| |
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|
| T |
11902716 |
cagcatcaatcaaataatctcttggaaacaatgaacaatatgcaaaacataactt |
11902770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 256
Target Start/End: Original strand, 11902331 - 11902573
Alignment:
| Q |
11 |
gttgtcacctttacctcatgcggaagctgagggttgttaatgttgtatggcaaaagaatggtccttagtttctttgctttctgaaacaccaaatcaggga |
110 |
Q |
| |
|
||||||| ||| ||||| || ||||| ||||||||||| || |||| |||||||||||||| || |||||||||||||| | |||| ||| || |||| |
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|
| T |
11902331 |
gttgtcatcttcacctcgtgtggaaggcgagggttgttagtgctgtacggcaaaagaatggttctcagtttctttgctttatcgaacaacaagtctggga |
11902430 |
T |
|
| Q |
111 |
tctcacatgtaagatctaaagcaaaatcgaatgaaactcgtagcattccatcttgaactctttcccgcatcacatccatggtgatgttttcgttaccagt |
210 |
Q |
| |
|
|| |||||| ||||| ||||||||||| |||||| |||| | ||||||| ||| |||| | |||| |||| || || || |||||||| | || || |
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|
| T |
11902431 |
tcccacatgacagatccaaagcaaaatcaaatgaagctcgcaacattccacctttaactttatcccccatcgaattcacagtcatgttttcttcacaggt |
11902530 |
T |
|
| Q |
211 |
gatttcttgcgttgcgagtttatgcatcaaccgattcattctatat |
256 |
Q |
| |
|
|| || || |||||||||||||||| |||||||||||||||||| |
|
|
| T |
11902531 |
ga---ctagccttgcgagtttatgcattaaccgattcattctatat |
11902573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 386 - 465
Target Start/End: Complemental strand, 11731508 - 11731429
Alignment:
| Q |
386 |
ccttcagcagtccagagttgaattaatctctctgcatcaatcaaataatcttctggaaacaatgaacaatatgcaaagca |
465 |
Q |
| |
|
||||||||| ||| ||||||||||||||||| ||||||||||||| || ||||||||||||||||||| |||||||||| |
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|
| T |
11731508 |
ccttcagcaaaccaaagttgaattaatctctcggcatcaatcaaatgatgttctggaaacaatgaacaaaatgcaaagca |
11731429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 381 - 475
Target Start/End: Original strand, 11974974 - 11975068
Alignment:
| Q |
381 |
gaaacccttcagcagtccagagttgaattaatctctctgcatcaatcaaataatcttctggaaacaatgaacaatatgcaaagcataacttctga |
475 |
Q |
| |
|
|||| ||||| || ||| |||| |||||||||||||| |||||||||||| ||||| ||||||||||||||| || |||| || ||||||||| |
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|
| T |
11974974 |
gaaatccttctgctgtcaagagatgaattaatctctcgacatcaatcaaatgatcttgaggaaacaatgaacaaaattcaaaacaaaacttctga |
11975068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 14 - 174
Target Start/End: Complemental strand, 11731868 - 11731708
Alignment:
| Q |
14 |
gtcacctttacctcatgcggaagctgagggttgttaatgtt---gtatggcaaaagaatggtccttagtttctttgctttctgaaacaccaaatcaggga |
110 |
Q |
| |
|
|||| ||| ||||| || |||||| |||||||||||||||| ||||||||| | ||||||||| |||||||||||| | ||||| | |||| || | |
|
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| T |
11731868 |
gtcatcttcacctcgtgtggaagccgagggttgttaatgtttttgtatggcaataaaatggtcctcagtttctttgctat---aaacatcgaatctggaa |
11731772 |
T |
|
| Q |
111 |
tctcacatgtaagatctaaagcaaaatcgaatgaaactcgtagcattccatcttgaactctttc |
174 |
Q |
| |
|
|| |||| | |||||| ||| ||||||| || ||| |||| |||||||| |||| |||| |||| |
|
|
| T |
11731771 |
tcccacacgaaagatccaaaccaaaatcaaacgaagctcgcagcattccttcttcaactttttc |
11731708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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