View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16678_low_8 (Length: 549)
Name: NF16678_low_8
Description: NF16678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16678_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 12 - 529
Target Start/End: Original strand, 22508197 - 22508714
Alignment:
| Q |
12 |
atgaaccgcacatgtatgcataacattttctgccggaacaacatattggtggaaactataaaataactctctcttgatcttcgatttccaggtatgacct |
111 |
Q |
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| T |
22508197 |
atgaaccgcacatgtatgcataacattttctgccggaacaacatattggtggaaactataaaataactctctcttgatcttcgatttccaggtatgacct |
22508296 |
T |
|
| Q |
112 |
ctctttctttctgcttcatctggacggtaaaaacgatgcgttgtgatcttcaagttcccttttagggattgttcaatgtcctgacagaaacacatagccg |
211 |
Q |
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||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
22508297 |
ctccttctttctgcttcatctggacggtaaaaaagatgcgttgtgatcttcaagttcccttttagggattgttcaatgtcctgacagaaaaacatagccg |
22508396 |
T |
|
| Q |
212 |
gcaatcagaaaatcgaaaggtgagtatattagccgcttgtgatcttcaaactattttcacaattataatacctaagttgacatctagtatcatagaacac |
311 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
22508397 |
gcaatcagaaaatcgaaaggtgaatatattagccgcttgtgatcttcaaactattttcacaattataatacctaagtagacatctagtatcatagaacac |
22508496 |
T |
|
| Q |
312 |
caatgttccaaaccaacacatcttaaaaaataaggtatagtgaatatatttgacaagttcatcttaagaaagggatatgctagctcaacacagctaagag |
411 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
22508497 |
caatgttccaaaccaacacatcttaaaatataaggtatagtgaatatatttgacaagttcatcttaagaaagggattgactagctcaacacagctaagag |
22508596 |
T |
|
| Q |
412 |
ataaagggttgaaggttgatgggttcaaattcgaacgaatgagttattaatattaacgaactactaatatttatcattaaaaacacgaaagaaaagagtt |
511 |
Q |
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| T |
22508597 |
ataaagagttgaaggtcgatgggttcaaattccaacgaaggagttattaatattaacgaactactaatatttatcattaaaaacaagaaaaaaaagagtt |
22508696 |
T |
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| Q |
512 |
caccttaataattgcaac |
529 |
Q |
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| T |
22508697 |
caccttaataattgcaac |
22508714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 40957995 - 40957872
Alignment:
| Q |
20 |
cacatgtatgcataacattttctgccggaacaacatattggtggaaactataaaataactctctcttgatcttcgatttccaggtatgacctctctttct |
119 |
Q |
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|||| |||||| ||||| |||||| |||||| | | |||||||||||||||| ||||||||||| | || |||| ||||||| ||||| ||| | |
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| T |
40957995 |
cacacgtatgcttaacagattctgcaggaacagcgtcttggtggaaactataatataactctctcgtctcatttgattgccaggtaccacctcctttttt |
40957896 |
T |
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| Q |
120 |
ttctgcttcatctggacggtaaaa |
143 |
Q |
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|||||||||| |||||||||||| |
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| T |
40957895 |
ctctgcttcatatggacggtaaaa |
40957872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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