View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16678_low_9 (Length: 540)
Name: NF16678_low_9
Description: NF16678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16678_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 434; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 1 - 524
Target Start/End: Complemental strand, 4970835 - 4970316
Alignment:
| Q |
1 |
aaaccaaaatccaaatgtgttacatctcattcccatttcttgtgtagccaatgccaccttaatgcaaaaatccttggatgaagctgaagaaagttactaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4970835 |
aaaccaaaatccaaatgtgttacatctcattcccatttcttgtgtagccaatgccaccttaatgctaaaatccttggatgaagctgaagaaagttactaa |
4970736 |
T |
|
| Q |
101 |
ctaggnnnnnnnnncttatattattacaatagaaattaaagttgttgaggtcctatgatcatatcaggatccctcatttttacaatgttatctctttgtt |
200 |
Q |
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||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4970735 |
ctaggaaaaaaaa-cttatatta---caatagaaattaaagttgttgaggtcctatgatcatatcaggatccctcatttttacaatgttatctctttgtt |
4970640 |
T |
|
| Q |
201 |
acaatatatttaacaaagacataacaatgtagcctctaatcaatatatctttctctcaattatcctcaagaaatatttgtacctgaaaattatcacaaaa |
300 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4970639 |
acaatatatttaacaaagacatagcaatgtagcctctaatcaatatatctttctctcaattatcctcaagaaatatttgtacctgaaaattatcacaaaa |
4970540 |
T |
|
| Q |
301 |
acataaattaacaaaatgtatatgaatatgaatatgaattagatcaagatgagcattgatatatataggggnnnnnnnnnnnntgcattgatataggaat |
400 |
Q |
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| T |
4970539 |
acataaattaacaaaatgtatatgaatatgaatatgaattagatcaagatgagcattgatatatataggggaaaaaagaaaaatgcattgatataggaat |
4970440 |
T |
|
| Q |
401 |
taattaattaccgcgtggaaaggtaaaaagggtgcaagaatgaagaatgtataaggaaggaacttaattcaatatggtggtgtaatggggtggatgcaag |
500 |
Q |
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| T |
4970439 |
taattaattaccgcgtggaaaggtaaaaagggtgcaagaatgaagaatgtataaggaaggaacttaattcaatatggtggtgtaatggggtggatgcaag |
4970340 |
T |
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| Q |
501 |
gtggtgacaacttggaacaaggac |
524 |
Q |
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| T |
4970339 |
gtggtgacaacttggaacaaggac |
4970316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 1 - 522
Target Start/End: Complemental strand, 4988744 - 4988227
Alignment:
| Q |
1 |
aaaccaaaatccaaatgtgttacatctcattcccatttcttgtgtagccaatgccaccttaatgcaaaaatccttggatgaagctgaagaaagttactaa |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4988744 |
aaaccaaaatccaaatgtgttacatctcattcccatttcttgtgtagccaatgccaccttaatgctaaaatccttggatgaagctgaagaaagttactaa |
4988645 |
T |
|
| Q |
101 |
ctaggnnnnnnnnncttatattattacaatagaaattaaagttgttgaggtcctatgatcatatcaggatccctcatttttacaatgttatctctttgtt |
200 |
Q |
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| T |
4988644 |
ctaggaaaaaaaa-cttatatta---caatagaaattaaagttgttgaggtcctatgatcatatcaggatccctcatttttacaatgttatctctttgtt |
4988549 |
T |
|
| Q |
201 |
acaatatatttaacaaagacataacaatgtagcctctaatcaatatatctttctctcaattatcctcaagaaatatttgtacctgaaaattatcacaaaa |
300 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4988548 |
acaatatatttaacaaagacatagcaatgtagcctctaatcaatatatctttctctcaattatcctcaagaaatatttgtacctgaaaattatcacaaaa |
4988449 |
T |
|
| Q |
301 |
acataaattaacaaaatgtatatgaatatgaatatgaattagatcaagatgagcattgatatatataggggnnnnnnnnnnnntgcattgatataggaat |
400 |
Q |
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| T |
4988448 |
acataaattaacaaaatgtatatgaatatgaatatgaattagatcaagatgagcattgatatatataggggaaaaaagaaaaatgcattgatataggaat |
4988349 |
T |
|
| Q |
401 |
taattaattaccgcgtggaaaggtaaaaagggtgcaagaatgaagaatgtataaggaaggaacttaattcaatatggtggtgtaatggggtggatgcaag |
500 |
Q |
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| T |
4988348 |
taattaattaccgcgtggaaaggtaaaaagggtgcaagaatgaagaatgtataaggaaggaacttaattcaatatggtggtgtaatggggtggatgcaag |
4988249 |
T |
|
| Q |
501 |
gtggtgacaacttggaacaagg |
522 |
Q |
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|||||||||||||||||||||| |
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| T |
4988248 |
gtggtgacaacttggaacaagg |
4988227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 385 - 457
Target Start/End: Complemental strand, 28571327 - 28571255
Alignment:
| Q |
385 |
gcattgatataggaattaattaattaccgcgtggaaaggtaaaaagggtgcaagaatgaagaatgtataagga |
457 |
Q |
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||||||||||||||||| ||||||||| |||| |||||| ||||||||||||| |||||||||||| |||||| |
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| T |
28571327 |
gcattgatataggaatttattaattacggcgtagaaagggaaaaagggtgcaaaaatgaagaatgtgtaagga |
28571255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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