View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16679_high_2 (Length: 490)
Name: NF16679_high_2
Description: NF16679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16679_high_2 |
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| [»] scaffold0070 (1 HSPs) |
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| [»] scaffold1505 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 25632824 - 25633099
Alignment:
| Q |
1 |
tataactttgattttgccccaccactcaatacagcctaaaaatgattgattgtgttaacaaattgtgcatgggattaaatttatataaactgaggaatca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25632824 |
tataactttgattttgccccaccactcaatacagcctaaaaatgattgattgtgttaacaaattgtgcatgggattaaatttatataaactgaggaatca |
25632923 |
T |
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| Q |
101 |
attactatgttgttaacatgactatgatagaaatggtgtttgcgtgttttaagtagtagtgaaggatgggtcatttatgctttaatttggatgtttcatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25632924 |
attactatgttgttaacatgactatgatagaaatggtgtttgcgtgttttaagtagtagtgaaggatgggtcatttatgctttaatttggatgtttcatt |
25633023 |
T |
|
| Q |
201 |
tcaggggaattttgatattgacg------catttttgaagaactaagtcttgctattattagagaagccatacaaa |
270 |
Q |
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||||||||||||||||||||||| ||||| |||||||| ||||||| || |||||||||||||| ||||| |
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| T |
25633024 |
tcaggggaattttgatattgacgtgtttacatttgtgaagaaccaagtcttactgctattagagaagccacacaaa |
25633099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 279 - 418
Target Start/End: Original strand, 25633130 - 25633268
Alignment:
| Q |
279 |
tggttcgtattgataaagtgtcaannnnnnnnnaagctaatgggatgcagaaggatctgctccacccaaagtttatcaaatttaaaagtgggaggacata |
378 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25633130 |
tggttcgtattgataaagtgtcaatttttttt-aagctaatgggatgcagaaggatctgctccacccaaagtttatcaaatttaaaagtgggaggacata |
25633228 |
T |
|
| Q |
379 |
taacctaactcattgtgaccaaaaaacaatcaacccacaa |
418 |
Q |
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| T |
25633229 |
taacctaactcattgtgaccaaaaaacaatcaacccacaa |
25633268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 26 - 106
Target Start/End: Original strand, 25400305 - 25400385
Alignment:
| Q |
26 |
tcaatacagcctaaaaatgattgattgtgttaacaaattgtgcatgggattaaatttatataaactgaggaatcaattact |
106 |
Q |
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| T |
25400305 |
tcaatacagcctaaaaatgattcattgtgttaacaaattgtgcatgggattaaatttatataaaccgaggaatcaattact |
25400385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 26 - 106
Target Start/End: Original strand, 25496484 - 25496564
Alignment:
| Q |
26 |
tcaatacagcctaaaaatgattgattgtgttaacaaattgtgcatgggattaaatttatataaactgaggaatcaattact |
106 |
Q |
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| T |
25496484 |
tcaatgcagcctaaaaatgattcattgtgttaacaaattgtgcatgagattaaatttatataaaccgaggaatcaattact |
25496564 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 25328909 - 25328997
Alignment:
| Q |
26 |
tcaatacagcctaaaaatgattgattgtgttaacaaattgtgcatgggattaaatttatataaactgaggaatcaattactatgttgttaaca |
118 |
Q |
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| T |
25328909 |
tcaatacagcctaaaaatgattcgttgtgttaacaaattgtacatgggattaaatt----taaagtgaggaatcaattactatgttgttaaca |
25328997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 23 - 118
Target Start/End: Original strand, 25736478 - 25736570
Alignment:
| Q |
23 |
cactcaatacagcctaaaaatgattgat-tgtgttaacaaattgtgcatgggattaaatttatataaactgaggaatcaattactatgttgttaaca |
118 |
Q |
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||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
25736478 |
cactcaatacagcctaaaaatgattcacatgtgttaacaaattgtgtatgggattaaatt----taaattgaggaatcaattactatgttgttaaca |
25736570 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 24893614 - 24893559
Alignment:
| Q |
23 |
cactcaatacagcctaaaaatgattgattgtgttaacaaattgtgcatgggattaa |
78 |
Q |
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| T |
24893614 |
cactcaatacagcctaaaaatgattcattgtgttaacaaattgtgcatggaattaa |
24893559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 482
Target Start/End: Original strand, 25329167 - 25329241
Alignment:
| Q |
408 |
tcaacccacaaggatgatatgatataaaacagtcttattgggtaaaataacccaaaattctaattcagaataatc |
482 |
Q |
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|||||||||| | || |||||| |||||||||||| ||||||||||||| |||||||||||||||| ||||| |
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| T |
25329167 |
tcaacccacaggagtggtatgatccaaaacagtcttacagggtaaaataacctaaaattctaattcagagtaatc |
25329241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 24 - 118
Target Start/End: Complemental strand, 29641 - 29551
Alignment:
| Q |
24 |
actcaatacagcctaaaaatgattgattgtgttaacaaattgtgcatgggattaaatttatataaactgaggaatcaattactatgttgttaaca |
118 |
Q |
| |
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||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
29641 |
actcaatacagccaaaaaatgattcattgtgttaacaaattgtgcatgggattaaatt----taaactgaggaatcaattactatgttgttaaca |
29551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1505 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold1505
Description:
Target: scaffold1505; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 23 - 114
Target Start/End: Complemental strand, 88 - 1
Alignment:
| Q |
23 |
cactcaatacagcctaaaaatgattgattgtgttaacaaattgtgcatgggattaaatttatataaactgaggaatcaattactatgttgtt |
114 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
88 |
cactcaatacagcctaaaaatgattcattgtgttaacaaattgtgtatgggattaaatt----taaactgaggaatcaattactatgttgtt |
1 |
T |
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