View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16679_low_1 (Length: 651)

Name: NF16679_low_1
Description: NF16679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16679_low_1
NF16679_low_1
[»] chr7 (6 HSPs)
chr7 (310-633)||(37616791-37617124)
chr7 (310-634)||(36828727-36829055)
chr7 (310-572)||(4554599-4554860)
chr7 (309-540)||(43282626-43282867)
chr7 (309-540)||(4968054-4968295)
chr7 (414-474)||(18713225-18713286)
[»] scaffold0044 (1 HSPs)
scaffold0044 (309-633)||(82908-83236)
[»] chr1 (8 HSPs)
chr1 (379-633)||(8113781-8114040)
chr1 (309-537)||(24765187-24765425)
chr1 (310-543)||(47974937-47975169)
chr1 (357-465)||(125287-125395)
chr1 (309-404)||(23894594-23894689)
chr1 (309-403)||(20010627-20010720)
chr1 (241-309)||(17204247-17204315)
chr1 (384-474)||(325836-325927)
[»] chr8 (2 HSPs)
chr8 (310-543)||(10289536-10289768)
chr8 (309-543)||(43266163-43266396)
[»] chr5 (3 HSPs)
chr5 (304-535)||(35228096-35228327)
chr5 (310-543)||(33672107-33672340)
chr5 (346-404)||(21286137-21286195)
[»] chr3 (5 HSPs)
chr3 (309-540)||(48663877-48664107)
chr3 (310-540)||(4100582-4100822)
chr3 (414-543)||(28160504-28160633)
chr3 (309-466)||(2994027-2994173)
chr3 (352-474)||(16900498-16900621)
[»] chr2 (7 HSPs)
chr2 (309-543)||(1658622-1658855)
chr2 (14-145)||(25287537-25287670)
chr2 (310-431)||(22710217-22710338)
chr2 (241-309)||(25287372-25287440)
chr2 (309-427)||(38432071-38432187)
chr2 (421-466)||(8148784-8148829)
chr2 (421-466)||(8153408-8153453)
[»] chr4 (1 HSPs)
chr4 (384-474)||(11057097-11057188)
[»] chr6 (1 HSPs)
chr6 (384-474)||(5319534-5319625)


Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 310 - 633
Target Start/End: Original strand, 37616791 - 37617124
Alignment:
Q  310 ctctgttgtcaatagcggcctaacgcggtgcgatcacggctgaaaatagcctagcgcgttagaacgcgaccgcatcgcgcgttatggaaaagcggtccaa 409  Q
    |||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  37616791 ctctgttgtcaatagcggcctaacgcggcgcgatcgcggctgaaaacagcctagcgcgttagaacgcgaccgcatcgcgtgttagggaaaagcggtccaa 37616890  T
Q  410 aattgggttttgcggccgctttacgtggagcggtagcgggtcaaatcgtccgctttttcgggtcgaaacaaaattacgaaattatccctcacttaagtaa 509  Q
    ||  |||||| ||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  37616891 aaccgggtttcgcggccgctttacgtggagcggtagcgggtcaaatcgcccacttttccgggtcgaaacgaaattacgaaattatccctcacttaagtaa 37616990  T
Q  510 cgttagaagggttaattttgtcattttcaaagccttgttttctttcatccattccatcgtagaacacaaccgct----------tcttctcttctcttca 599  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||          ||||||||||||||||    
T  37616991 cgttagaagggttaattttgtcattttcaaagccctattttctttcatccattccatcgtagaacacagccgcttcttctcttctcttctcttctcttca 37617090  T
Q  600 ttccatcgcaaaacaactcttcatctcatctctt 633  Q
    ||||||||||||||||| ||||| ||||||||||    
T  37617091 ttccatcgcaaaacaacacttcacctcatctctt 37617124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 310 - 634
Target Start/End: Complemental strand, 36829055 - 36828727
Alignment:
Q  310 ctctgttgtcaatagcggcctaacgcggtgcgatcacggctgaaaatagcctagcgcgttagaacgcgaccgcatcgcgcgttatggaaaagcggtccaa 409  Q
    |||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  36829055 ctctgttgtcaatagcggcctaacgcggcgcgatcgcggctgaaaacagcctagcgcgttagatcgcgaccgcatcgcgcgttagggaaaagcggtccaa 36828956  T
Q  410 aattgggttttgcggccgctttacgtggagcggtagcgggtcaaatcgtccgctttttcgggtcgaaacaaaattacgaaattatccctcacttaagtaa 509  Q
    ||  |||||| ||||||||||||| ||||||||||||||||||||||| |||||||| | ||||| ||| ||||||||||||||||||||||||||||||    
T  36828955 aaccgggtttcgcggccgctttacatggagcggtagcgggtcaaatcgcccgcttttccaggtcg-aacgaaattacgaaattatccctcacttaagtaa 36828857  T
Q  510 cgttagaagggttaattttgtcattttcaaagccttgttttctttcatccattccatcgtagaacacaaccgct-----tcttctcttctcttcattcca 604  Q
    |||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||| |||||     |||||||||||||||||||||    
T  36828856 cgttagaagggttaattttgtcattttcaaagtcctattttctttcatccattccatcgtagaacacagccgcttcttctcttctcttctcttcattcca 36828757  T
Q  605 tcgcaaaacaactcttcatctcatctcttt 634  Q
    |||||||||||| |||||||||||||||||    
T  36828756 tcgcaaaacaacacttcatctcatctcttt 36828727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 310 - 572
Target Start/End: Complemental strand, 4554860 - 4554599
Alignment:
Q  310 ctctgttgtcaatagcggcctaacgcggtgcgatcacggctgaaaatagcctagcgcgttagaacgcgaccgcatcgcgcgttatggaaaagcggtccaa 409  Q
    |||||||||||||||||  | || |||| |||||| |||||||||| |||||||| ||| ||||||||||||  |||||||||| | ||||||||  |||    
T  4554860 ctctgttgtcaatagcgttcaaatgcggcgcgatcgcggctgaaaacagcctagc-cgtcagaacgcgaccgagtcgcgcgttaggcaaaagcggaacaa 4554762  T
Q  410 aattgggttttgcggccgctttacgtggagcggtagcgggtcaaatcgtccgctttttcgggtcgaaacaaaattacgaaattatccctcacttaagtaa 509  Q
    ||  |||||| ||||||||||||| ||||| ||||||||||||||||  |||||||| ||| ||||||| |||||| | |||||||||||||||||||||    
T  4554761 aaccgggtttcgcggccgctttacatggagtggtagcgggtcaaatcacccgcttttccggttcgaaacgaaattatggaattatccctcacttaagtaa 4554662  T
Q  510 cgttagaagggttaattttgtcattttcaaagccttgttttctttcatccattccatcgtaga 572  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  4554661 cgttagaagggttaattttgtcattttcaaagccctattttctttcatccattccatcgtaga 4554599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 309 - 540
Target Start/End: Original strand, 43282626 - 43282867
Alignment:
Q  309 cctctgttgtcaatagcggcctaacgcggtgcgatcacggc----------tgaaaatagcctagcgcgttagaacgcgaccgcatcgcgcgttatggaa 398  Q
    ||||||||||||||||||||||||||||| |||||| ||||          |||||| |||||||||||| |||||||||||||||||||||||| | ||    
T  43282626 cctctgttgtcaatagcggcctaacgcggcgcgatcgcggcgcggagcggctgaaaacagcctagcgcgtcagaacgcgaccgcatcgcgcgttaggcaa 43282725  T
Q  399 aagcggtccaaaattgggttttgcggccgctttacgtggagcggtagcgggtcaaatcgtccgctttttcgggtcgaaacaaaattacgaaattatccct 498  Q
    ||||||   ||||  |||||| ||||| ||||| |||||||||| |||||||| ||     ||| ||| ||||||||| | |||||||  ||||| ||||    
T  43282726 aagcggctgaaaaccgggtttcgcggctgcttttcgtggagcgggagcgggtctaacgcggcgcgtttccgggtcgaagcgaaattacagaattacccct 43282825  T
Q  499 cacttaagtaacgttagaagggttaattttgtcattttcaaa 540  Q
    ||||||||| || ||||||||||||||||||| |||||||||    
T  43282826 cacttaagtgacattagaagggttaattttgtaattttcaaa 43282867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 309 - 540
Target Start/End: Original strand, 4968054 - 4968295
Alignment:
Q  309 cctctgttgtcaatagcggcctaacgcggtgcgatcacggc----------tgaaaatagcctagcgcgttagaacgcgaccgcatcgcgcgttatggaa 398  Q
    ||||||||||||||||||||||||||||| |||||| ||||          |||||| |||||||||| | |||||||||||||||||||||||| | ||    
T  4968054 cctctgttgtcaatagcggcctaacgcggcgcgatcgcggcgcggagcggctgaaaacagcctagcgcatcagaacgcgaccgcatcgcgcgttaggcaa 4968153  T
Q  399 aagcggtccaaaattgggttttgcggccgctttacgtggagcggtagcgggtcaaatcgtccgctttttcgggtcgaaacaaaattacgaaattatccct 498  Q
    ||||||   ||||  |||||| ||||||||||| |||||||| | |||||||| ||     ||| ||| ||||||||| | |||||||  ||||| ||||    
T  4968154 aagcggctgaaaaccgggtttcgcggccgcttttcgtggagctggagcgggtctaacgcggcgcgtttccgggtcgaagcgaaattacagaattacccct 4968253  T
Q  499 cacttaagtaacgttagaagggttaattttgtcattttcaaa 540  Q
    ||||||||| || ||||||||||||||||||| |||||||||    
T  4968254 cacttaagtgacattagaagggttaattttgtaattttcaaa 4968295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 414 - 474
Target Start/End: Complemental strand, 18713286 - 18713225
Alignment:
Q  414 gggttttgcggccgc-tttacgtggagcggtagcgggtcaaatcgtccgctttttcgggtcg 474  Q
    |||||| |||||||| ||||| |||||||| |||||||||||||| |||||||| |||||||    
T  18713286 gggtttcgcggccgcctttacctggagcgggagcgggtcaaatcgcccgcttttccgggtcg 18713225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 309 - 633
Target Start/End: Original strand, 82908 - 83236
Alignment:
Q  309 cctctgttgtcaatagcggcctaacgcggtgcgatcacggctgaaaatagcctagcgcgttagaacgcgaccgcatcgcgcgttatggaaaagcggtcca 408  Q
    ||||| |||||||||||||||||||||||  ||    |||| ||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  82908 cctcttttgtcaatagcggcctaacgcggctcggag-cggcggaaaacagcctagcgcgttagaacgcgaccacatcgcgcgttagggaaaagcggtcca 83006  T
Q  409 aaattgggttttgcggccgctttacgtggagcggtagcgggtcaaatcgtccgctttttcgggtcgaaacaaaattacgaaattatccctcacttaagta 508  Q
    |||  |||||| |||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||| ||||||||||||||||||||||||    
T  83007 aaaccgggtttcgcgggcgctttacgtggagcggtagcgggtcaaatcgcccgcttttccgggtcgaaacgaaataacgaaattatccctcacttaagta 83106  T
Q  509 acgttagaagggttaattttgtcattttcaaagccttgttttctttcatccattccatcgtagaacacaaccgct-----tcttctcttctcttcattcc 603  Q
    |||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||| |||||     ||||||||||||||||||||    
T  83107 acgttagaagggttaattttgtcattttcaaaaccctattttctttcatccattccatcgtagaacacagccgcttcttctcttctcttctcttcattcc 83206  T
Q  604 atcgcaaaacaactcttcatctcatctctt 633  Q
    || |||||||||| ||||||||||||||||    
T  83207 atagcaaaacaacacttcatctcatctctt 83236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 180; Significance: 7e-97; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 379 - 633
Target Start/End: Original strand, 8113781 - 8114040
Alignment:
Q  379 ccgcatcgcgcgttatggaaaagcggtccaaaattgggttttgcggccgctttacgtggagcggtagcgggtcaaatcgtccgctttttcgggtcgaaac 478  Q
    ||||||||||||||| |||||| |||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||| |||||||| ||| |||||||    
T  8113781 ccgcatcgcgcgttagggaaaaacggtccaaaactgggtttcgcggccgctttacatggagcggtagcgggtcaaatcgcccgcttttccggatcgaaac 8113880  T
Q  479 aaaattacgaaattatccctcacttaagtaacgttagaagggttaattttgtcattttcaaagccttgttttctttcatccattccatcgtagaacacaa 578  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||     
T  8113881 gaaattacgaaattatccctcacttaagtaacgttagaagggttaattttgtcattttcaaagccctattttctttcatccattccattgtagaacacag 8113980  T
Q  579 ccgct-----tcttctcttctcttcattccatcgcaaaacaactcttcatctcatctctt 633  Q
    |||||     ||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  8113981 ccgcttcttctcttctcttctcttcattccatcacaaaacaacacttcatctcatctctt 8114040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 309 - 537
Target Start/End: Original strand, 24765187 - 24765425
Alignment:
Q  309 cctctgttgtcaatagcggcctaacgcggtgcgatcacggc----------tgaaaatagcctagcgcgttagaacgcgaccgcatcgcgcgttatggaa 398  Q
    ||||||||||||||||||||||||||||| |||||| ||||          |||||| ||||||||||||||||||||||||||| ||||||||| | ||    
T  24765187 cctctgttgtcaatagcggcctaacgcggcgcgatcgcggcgcggagcggctgaaaacagcctagcgcgttagaacgcgaccgcaacgcgcgttaggcaa 24765286  T
Q  399 aagcggtccaaaattgggttttgcggccgctttacgtggagcggtagcgggtcaaatcgtccgctttttcgggtcgaaacaaaattacgaaattatccct 498  Q
    |||||| || |||  || ||| | ||||||||| | ||||||||||||||||||||||| |||||||| ||||||||   ||||||||||||||  ||||    
T  24765287 aagcggacctaaaccggttttcgtggccgcttttcctggagcggtagcgggtcaaatcgcccgcttttccgggtcgaccaaaaattacgaaattgcccct 24765386  T
Q  499 cacttaagtaacgttagaagggttaattttgtcattttc 537  Q
    ||||||||| || |||| |||||||||||||| ||||||    
T  24765387 cacttaagtgacattagtagggttaattttgtaattttc 24765425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 310 - 543
Target Start/End: Complemental strand, 47975169 - 47974937
Alignment:
Q  310 ctctgttgtcaatagcggcctaacgcggtgcgatcacggctgaaaatagcctagcgcgttagaacgcgaccgcatcgcgcgttatggaaaagcggtccaa 409  Q
    |||||||||||||||||||||||||||| |||    |||||||||| |||||||||||| |||||||||||||||||||||||| | ||||||||   ||    
T  47975169 ctctgttgtcaatagcggcctaacgcggcgcggag-cggctgaaaacagcctagcgcgtcagaacgcgaccgcatcgcgcgttaggcaaaagcggctgaa 47975071  T
Q  410 aattgggttttgcggccgctttacgtggagcggtagcgggtcaaatcgtccgctttttcgggtcgaaacaaaattacgaaattatccctcacttaagtaa 509  Q
    ||  |||||| ||||||||||| |||||||||| |||||||| ||     ||| ||| ||||||||| | |||||||  ||||| ||||||||||||| |    
T  47975070 aaccgggtttcgcggccgcttttcgtggagcgggagcgggtctaacgcggcgcgtttccgggtcgaagcgaaattacagaattacccctcacttaagtga 47974971  T
Q  510 cgttagaagggttaattttgtcattttcaaagcc 543  Q
    | ||||||||||||||||||| ||||||||||||    
T  47974970 cattagaagggttaattttgtaattttcaaagcc 47974937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 357 - 465
Target Start/End: Original strand, 125287 - 125395
Alignment:
Q  357 agcctagcgcgttagaacgcgaccgcatcgcgcgttatggaaaagcggtccaaaattgggttttgcggccgctttacgtggagcggtagcgggtcaaatc 456  Q
    |||||||||||| ||||| ||||||  ||| |||||| | ||||||||  |||||  |||||| ||||||||||||| |||||||||||||||||||| |    
T  125287 agcctagcgcgtcagaactcgaccgagtcgtgcgttaggcaaaagcggaacaaaaccgggtttcgcggccgctttacatggagcggtagcgggtcaaagc 125386  T
Q  457 gtccgcttt 465  Q
    | |||||||    
T  125387 ggccgcttt 125395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 309 - 404
Target Start/End: Complemental strand, 23894689 - 23894594
Alignment:
Q  309 cctctgttgtcaatagcggcctaacgcggtgcgatcacggctgaaaatagcctagcgcgttagaacgcgaccgcatcgcgcgttatggaaaagcgg 404  Q
    |||||||||||||||||||||||| | || |||||| |||||||||| |||||||||||| |||||||||| |  || ||||||| | ||||||||    
T  23894689 cctctgttgtcaatagcggcctaatgtggcgcgatcgcggctgaaaacagcctagcgcgtcagaacgcgactgagtcacgcgttaggcaaaagcgg 23894594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 309 - 403
Target Start/End: Complemental strand, 20010720 - 20010627
Alignment:
Q  309 cctctgttgtcaatagcggcctaacgcggtgcgatcacggctgaaaatagcctagcgcgttagaacgcgaccgcatcgcgcgttatggaaaagcg 403  Q
    |||||||||||||| |||| ||||||||| |||    |||||||||| |||||||||||||||||||||||||  |||||||||| | |||||||    
T  20010720 cctctgttgtcaattgcgggctaacgcggcgcggag-cggctgaaaacagcctagcgcgttagaacgcgaccgagtcgcgcgttaggcaaaagcg 20010627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 241 - 309
Target Start/End: Original strand, 17204247 - 17204315
Alignment:
Q  241 ggtgaagacaaccatgactatgactgagaagataatcgctgaagcttttgacaaggggcacgttacacc 309  Q
    |||||||||| | ||||||||||||||||||||||| ||  |||||| ||| |||||||| ||||||||    
T  17204247 ggtgaagacagctatgactatgactgagaagataatggcgaaagcttctgagaaggggcatgttacacc 17204315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 384 - 474
Target Start/End: Complemental strand, 325927 - 325836
Alignment:
Q  384 tcgcgcgttatggaaaagcggtccaaaattgggttttgcggccgc-tttacgtggagcggtagcgggtcaaatcgtccgctttttcgggtcg 474  Q
    |||||||||| ||||||||||  ||| |  |||||| |||||||| ||||| |||||||| |||||||||||||| | |||||| |||||||    
T  325927 tcgcgcgttagggaaaagcgggtcaatagcgggtttcgcggccgcctttacctggagcgggagcgggtcaaatcgcctgcttttccgggtcg 325836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 130; Significance: 5e-67; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 310 - 543
Target Start/End: Original strand, 10289536 - 10289768
Alignment:
Q  310 ctctgttgtcaatagcggcctaacgcggtgcgatcacggctgaaaatagcctagcgcgttagaacgcgaccgcatcgcgcgttatggaaaagcggtccaa 409  Q
    |||||||||||||||||| ||||| ||| |||    ||| |||||| ||||||||||||||||||||||||||| ||||||||| | ||||||||||| |    
T  10289536 ctctgttgtcaatagcggtctaacacggcgcggag-cggttgaaaacagcctagcgcgttagaacgcgaccgcaacgcgcgttaggcaaaagcggtccta 10289634  T
Q  410 aattgggttttgcggccgctttacgtggagcggtagcgggtcaaatcgtccgctttttcgggtcgaaacaaaattacgaaattatccctcacttaagtaa 509  Q
    ||  |||||||||||||||||| | |||||||| |||||||||||||| |||||||| ||||||||||||||||||| |||||| ||||||||||||| |    
T  10289635 aaccgggttttgcggccgcttttcatggagcgggagcgggtcaaatcgcccgcttttccgggtcgaaacaaaattacaaaattacccctcacttaagtga 10289734  T
Q  510 cgttagaagggttaattttgtcattttcaaagcc 543  Q
    | ||||||||||||||||||| ||||||||||||    
T  10289735 cattagaagggttaattttgtaattttcaaagcc 10289768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 309 - 543
Target Start/End: Complemental strand, 43266396 - 43266163
Alignment:
Q  309 cctctgttgtcaatagcggcctaacgcggtgcgatcacggctgaaaatagcctagcgcgttagaacgcgaccgcatcgcgcgttatggaaaagcggtcca 408  Q
    ||||||||||||||||||||||||||||| |||    |||||||||| |||||||||||| ||||| |||||||||||||||||| | ||||||||   |    
T  43266396 cctctgttgtcaatagcggcctaacgcggcgcggag-cggctgaaaacagcctagcgcgtcagaacacgaccgcatcgcgcgttaggcaaaagcggctga 43266298  T
Q  409 aaattgggttttgcggccgctttacgtggagcggtagcgggtcaaatcgtccgctttttcgggtcgaaacaaaattacgaaattatccctcacttaagta 508  Q
    |||  |||||| ||||||||||| |||||||||| || ||||| ||     ||| ||||||||||||| | |||||||  ||||| |||||||||||||     
T  43266297 aaaccgggtttcgcggccgcttttcgtggagcgggagtgggtctaacgcggcgcgttttcgggtcgaagcgaaattacagaattacccctcacttaagtg 43266198  T
Q  509 acgttagaagggttaattttgtcattttcaaagcc 543  Q
    || ||||||||||||||||||| ||||||||||||    
T  43266197 acattagaagggttaattttgtaattttcaaagcc 43266163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 116; Significance: 1e-58; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 304 - 535
Target Start/End: Complemental strand, 35228327 - 35228096
Alignment:
Q  304 tacaccctctgttgtcaatagcggcctaacgcggtgcgatcacggctgaaaatagcctagcgcgttagaacgcgaccgcatcgcgcgttatggaaaagcg 403  Q
    |||| |||| |||||||||||||  | ||||||| |||||| |||||||||| |||||||||||| ||||||||| ||  |||||| ||| | |||||||    
T  35228327 tacaacctccgttgtcaatagcgatcaaacgcggcgcgatcgcggctgaaaacagcctagcgcgtcagaacgcgatcgagtcgcgcattaagcaaaagcg 35228228  T
Q  404 gtccaaaattgggttttgcggccgctttacgtggagcggtagcgggtcaaatcgtccgctttttcgggtcgaaacaaaattacgaaattatccctcactt 503  Q
    |  |||||  |||||| || |||||||||| |||||||||||| |||||| ||| |||||||| ||||||||||| |||||||| |||||||||||||||    
T  35228227 gaacaaaaccgggtttcgcagccgctttacatggagcggtagctggtcaagtcgcccgcttttccgggtcgaaacgaaattacggaattatccctcactt 35228128  T
Q  504 aagtaacgttagaagggttaattttgtcattt 535  Q
    | ||||||||||||||||||||||||||||||    
T  35228127 atgtaacgttagaagggttaattttgtcattt 35228096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 310 - 543
Target Start/End: Original strand, 33672107 - 33672340
Alignment:
Q  310 ctctgttgtcaatagcggcctaacgcggtgcgatcacggctgaaaatagcctagcgcgttagaacgcgaccgcatcgcgcgttatggaaaagcggtccaa 409  Q
    ||||||||||| |||||||||||||||| |||||| | |||||||| |||||||||||| |||||||||||||||||||||||| | ||||||||   ||    
T  33672107 ctctgttgtcagtagcggcctaacgcggcgcgatcgctgctgaaaacagcctagcgcgtcagaacgcgaccgcatcgcgcgttaggcaaaagcggctgaa 33672206  T
Q  410 aattgggttttgcggccgctttacg-tggagcggtagcgggtcaaatcgtccgctttttcgggtcgaaacaaaattacgaaattatccctcacttaagta 508  Q
    ||  |||||| |||||||||||  | | |||||| || ||||| ||     ||| ||| ||||| ||| | |||||||  ||||| ||||||| |||||     
T  33672207 aaccgggtttcgcggccgctttttgttagagcgggagtgggtctaacgcggcgcgtttccgggttgaagcgaaattacataattacccctcac-taagtg 33672305  T
Q  509 acgttagaagggttaattttgtcattttcaaagcc 543  Q
    || ||||||||||||||||||| ||||||||||||    
T  33672306 acattagaagggttaattttgtaattttcaaagcc 33672340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 346 - 404
Target Start/End: Complemental strand, 21286195 - 21286137
Alignment:
Q  346 cggctgaaaatagcctagcgcgttagaacgcgaccgcatcgcgcgttatggaaaagcgg 404  Q
    |||||||||| |||||||||||| | ||||||||||  |||||||||| | ||||||||    
T  21286195 cggctgaaaacagcctagcgcgtcaaaacgcgaccgagtcgcgcgttaggcaaaagcgg 21286137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 4e-49; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 309 - 540
Target Start/End: Complemental strand, 48664107 - 48663877
Alignment:
Q  309 cctctgttgtcaatagcggcctaacgcggtgcgatcacggctgaaaatagcctagcgcgttagaacgcgaccgcatcgcgcgttatggaaaagcggtcca 408  Q
    ||||||||||||||||||||||||||||| ||||   |||||||||| |||||||||||| |||||||||||||||||||||||| | ||||||||   |    
T  48664107 cctctgttgtcaatagcggcctaacgcggcgcgaag-cggctgaaaacagcctagcgcgtcagaacgcgaccgcatcgcgcgttaggcaaaagcggctga 48664009  T
Q  409 aaattgggttttgcggccgctttacgtggagcggtagcgggtcaaatcgtccgctttttcgggtcgaaacaaaattacgaaattatccctcacttaagta 508  Q
    |||  |||||| ||||||||||| |||||||||| |||||||| ||     ||| ||| ||||||||| | |||||||  ||||| |||||||||||||     
T  48664008 aaaccgggtttcgcggccgcttttcgtggagcgggagcgggtctaacgcggcgcgtttccgggtcgaagcgaaattacagaattacccctcacttaagtg 48663909  T
Q  509 acgttagaagggttaattttgtcattttcaaa 540  Q
    || ||||||||||||||||||| |||||||||    
T  48663908 acattagaagggttaattttgtaattttcaaa 48663877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 310 - 540
Target Start/End: Original strand, 4100582 - 4100822
Alignment:
Q  310 ctctgttgtcaatagcggcctaacgcggtgcgatcacggc----------tgaaaatagcctagcgcgttagaacgcgaccgcatcgcgcgttatggaaa 399  Q
    |||||||||||||||||||||||||||| |||||| ||||          |||||| |||||||||||| |||||||||||||||||||||||| | |||    
T  4100582 ctctgttgtcaatagcggcctaacgcggcgcgatcgcggcgcggagcggctgaaaacagcctagcgcgtcagaacgcgaccgcatcgcgcgttaggcaaa 4100681  T
Q  400 agcggtccaaaattgggttttgcggccgctttacgtggagcggtagcgggtcaaatcgtccgctttttcgggtcgaaacaaaattacgaaattatccctc 499  Q
    ||| |   ||||  |||||| ||||||||||| |||||||||| |||||||| ||     ||| ||| ||||||||| | |||||||  ||||| |||||    
T  4100682 agcagctgaaaaccgggtttcgcggccgcttttcgtggagcgggagcgggtctaacgcggcgcgtttccgggtcgaagcgaaattacagaattacccctc 4100781  T
Q  500 acttaagtaacgttagaagggttaattttgtcattttcaaa 540  Q
    |||||||| || |||||||| |||||||||| |||||||||    
T  4100782 acttaagtgacattagaaggtttaattttgtaattttcaaa 4100822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 414 - 543
Target Start/End: Original strand, 28160504 - 28160633
Alignment:
Q  414 gggttttgcggccgctttacgtggagcggtagcgggtcaaatcgtccgctttttcgggtcgaaacaaaattacgaaattatccctcacttaagtaacgtt 513  Q
    |||||||||||||||||| |||||||||| |||||||| |      | | ||| ||||||||| | |||||||  ||||| ||||||||||||| || ||    
T  28160504 gggttttgcggccgcttttcgtggagcgggagcgggtctagcgcggcacgtttccgggtcgaagcgaaattacagaattacccctcacttaagtgacatt 28160603  T
Q  514 agaagggttaattttgtcattttcaaagcc 543  Q
    |||| |||||||||||| ||||||||||||    
T  28160604 agaaaggttaattttgtaattttcaaagcc 28160633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 309 - 466
Target Start/End: Complemental strand, 2994173 - 2994027
Alignment:
Q  309 cctctgttgtcaatagcggcctaacgcggtgcgatcacggctgaaaatagcctagcgcgttagaacgcgaccgcatcgcgcgttatggaaaagcggtcca 408  Q
    ||||||||||||||||||||| ||||||| || ||| |||| ||||| |||||||||||| ||| ||||||||  || || |||| |||||||           
T  2994173 cctctgttgtcaatagcggccaaacgcggcgcaatcgcggccgaaaacagcctagcgcgtcagagcgcgaccgagtcacgtgttagggaaaag------- 2994081  T
Q  409 aaattgggttttgcggccgctttacgtggagcggtagcgggtcaaatcgtccgctttt 466  Q
        ||||||| ||||||||||||| ||||  ||||||||||||||||| | ||||||    
T  2994080 ----tgggtttcgcggccgctttacatggattggtagcgggtcaaatcgccagctttt 2994027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 352 - 474
Target Start/End: Complemental strand, 16900621 - 16900498
Alignment:
Q  352 aaaatagcctagcgcgttagaacgcgaccgcatcgcgcgttatggaaaagcggtccaaaattgggttttgcggccgc-tttacgtggagcggtagcgggt 450  Q
    |||| |||||| ||||| ||| ||| ||||  ||||| |||| ||||||| ||  ||| |  ||||||||||||| | ||||| |||||||| |||||||    
T  16900621 aaaacagcctaccgcgtcagagcgctaccgattcgcgtgttagggaaaagtgggtcaatagcgggttttgcggccacctttacttggagcgggagcgggt 16900522  T
Q  451 caaatcgtccgctttttcgggtcg 474  Q
    ||||||| |||||||| |||||||    
T  16900521 caaatcgcccgcttttccgggtcg 16900498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 2e-48; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 309 - 543
Target Start/End: Original strand, 1658622 - 1658855
Alignment:
Q  309 cctctgttgtcaatagcggcctaacgcggtgcgatcacggctgaaaatagcctagcgcgttagaacgcgaccgcatcgcgcgttatggaaaagcggtcca 408  Q
    ||||||||||||||||||||||||||||| |||    |||||||||| |||||||||||| |||||||||||||||||||||||| | ||||||||   |    
T  1658622 cctctgttgtcaatagcggcctaacgcggcgcggag-cggctgaaaacagcctagcgcgtcagaacgcgaccgcatcgcgcgttaggcaaaagcggctga 1658720  T
Q  409 aaattgggttttgcggccgctttacgtggagcggtagcgggtcaaatcgtccgctttttcgggtcgaaacaaaattacgaaattatccctcacttaagta 508  Q
    |||  |||||| ||||||||||| |||||||||| |||||||| ||     ||| ||| ||||||||| | |||||||  ||||| |||||||||||||     
T  1658721 aaaccgggtttcgcggccgcttttcgtggagcgggagcgggtctaacgcggcgcgtttccgggtcgaagcgaaattacagaattacccctcacttaagtg 1658820  T
Q  509 acgttagaagggttaattttgtcattttcaaagcc 543  Q
    || ||||||||||||||||||| ||||||||||||    
T  1658821 acattagaagggttaattttgtaattttcaaagcc 1658855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 14 - 145
Target Start/End: Complemental strand, 25287670 - 25287537
Alignment:
Q  14 tgatatgaaagaattgcagtttttgctatttccagctattatgttacgttaaccgttaaacatacatttttagtgttttc--nnnnnnnnggaaggtcac 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||          ||||||||||    
T  25287670 tgatatgaaagaattgcagtttttgctatttccagctattatgttacgttaactgttaaacatacatttttagtgttttcttttttttttggaaggtcac 25287571  T
Q  112 ctatgagattaggtgtttcttcgttttgtttatt 145  Q
    ||||||||||||||||||||||||||||||||||    
T  25287570 ctatgagattaggtgtttcttcgttttgtttatt 25287537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 310 - 431
Target Start/End: Original strand, 22710217 - 22710338
Alignment:
Q  310 ctctgttgtcaatagcggcctaacgcggtgcgatcacggctgaaaatagcctagcgcgttagaacgcgaccgcatcgcgcgttatggaaaagcggtccaa 409  Q
    ||||||||||||||||||| ||||||||  ||||| |||||||||| |||||||||||| |||||||||||||| ||||||||| | || ||||| | ||    
T  22710217 ctctgttgtcaatagcggcttaacgcggcacgatcgcggctgaaaacagcctagcgcgtcagaacgcgaccgcaacgcgcgttaggcaatagcgggcgaa 22710316  T
Q  410 aattgggttttgcggccgcttt 431  Q
    ||  |||||| |||||||||||    
T  22710317 aaccgggtttcgcggccgcttt 22710338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 241 - 309
Target Start/End: Complemental strand, 25287440 - 25287372
Alignment:
Q  241 ggtgaagacaaccatgactatgactgagaagataatcgctgaagcttttgacaaggggcacgttacacc 309  Q
    ||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  25287440 ggtgaagacaaccatgattatgactgagaagataatggctaaagcttttgacaaggggcacgttacacc 25287372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 427
Target Start/End: Original strand, 38432071 - 38432187
Alignment:
Q  309 cctctgttgtcaatagcggcctaacgcggtgcgatcacggctgaaaatagcctagcgcgttagaacgcgaccgcatcgcgcgttatggaaaagcggtcca 408  Q
    ||||||||||||||| ||| ||||||||| |||    |||||||||| |||||||||||| ||||||||||||  ||||||||||   ||||||||  ||    
T  38432071 cctctgttgtcaata-cgggctaacgcggcgcggag-cggctgaaaacagcctagcgcgtcagaacgcgaccgagtcgcgcgttagacaaaagcggaaca 38432168  T
Q  409 aaattgggttttgcggccg 427  Q
    |||  |||||| |||||||    
T  38432169 aaacggggtttcgcggccg 38432187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 421 - 466
Target Start/End: Original strand, 8148784 - 8148829
Alignment:
Q  421 gcggccgctttacgtggagcggtagcgggtcaaatcgtccgctttt 466  Q
    ||||||||||||| ||||||||||||||||||||||| || |||||    
T  8148784 gcggccgctttacatggagcggtagcgggtcaaatcgcccactttt 8148829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 421 - 466
Target Start/End: Original strand, 8153408 - 8153453
Alignment:
Q  421 gcggccgctttacgtggagcggtagcgggtcaaatcgtccgctttt 466  Q
    ||||||||||||| ||||||||||||||||||||||| || |||||    
T  8153408 gcggccgctttacatggagcggtagcgggtcaaatcgcccactttt 8153453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 384 - 474
Target Start/End: Complemental strand, 11057188 - 11057097
Alignment:
Q  384 tcgcgcgttatggaaaagcggtccaaaattgggttttgcggccgc-tttacgtggagcggtagcgggtcaaatcgtccgctttttcgggtcg 474  Q
    |||||||||| ||||||||||  ||| |  |||||| |||||||  ||||| |||||||| |||||||||||||| |||||||| |||||||    
T  11057188 tcgcgcgttagggaaaagcgggtcaatagcgggtttcgcggccgggtttacctggagcgggagcgggtcaaatcgcccgcttttccgggtcg 11057097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 474
Target Start/End: Original strand, 5319534 - 5319625
Alignment:
Q  384 tcgcgcgttatggaaaagcggtccaaaattgggttttgcggccgc-tttacgtggagcggtagcgggtcaaatcgtccgctttttcgggtcg 474  Q
    |||||||||| ||||||||||  | | |  |||||| |||||||| ||||| |||||||| |||||||||||||| | |||||| |||||||    
T  5319534 tcgcgcgttagggaaaagcgggtccatagcgggtttcgcggccgcctttacctggagcgggagcgggtcaaatcgccagcttttccgggtcg 5319625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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