View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16679_low_10 (Length: 278)
Name: NF16679_low_10
Description: NF16679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16679_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 19 - 154
Target Start/End: Complemental strand, 38526573 - 38526438
Alignment:
| Q |
19 |
gtcttagcaaaatagaaggtgctggcatgcttgtaaaccatcaagtaactgctattttcaaattctctccaaaaattttaacattgttgcatacctaaaa |
118 |
Q |
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| T |
38526573 |
gtcttagcaaaatagaaggtgctggcatgcttgtaaaccatcaagtaactgctatttttaaattctctccgaaaattttaacattgttgtatacctaaaa |
38526474 |
T |
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| Q |
119 |
ttaaatttaaatgttgtaagatttggtaaataagtt |
154 |
Q |
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| T |
38526473 |
ttaaatttaaatgttgtgagatttggtaaataagtt |
38526438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 166 - 264
Target Start/End: Complemental strand, 38526363 - 38526266
Alignment:
| Q |
166 |
aacactgcctaacatcggtgtgtcaaatccaattttttcaaagtaattaaattttgtttacaagcttcggccagctttagaggtaactaacaccatccc |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38526363 |
aacactgcctaacatcggtgtgtcaaatccaattttttcaaagtaattaa-ttttgtttacaagcttcggccagctttagaggtaactaacaccatccc |
38526266 |
T |
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