View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16679_low_11 (Length: 254)
Name: NF16679_low_11
Description: NF16679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16679_low_11 |
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| [»] scaffold0150 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 17522912 - 17522677
Alignment:
| Q |
1 |
tttacacattgaatatatactaacctcatccatccccatctcaaccaccgtttcttgcaaggtaccgatctctttcacattgaacttgttgagcagtgtg |
100 |
Q |
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| T |
17522912 |
tttacacattgtatatacactaacctcatccatccccatctcaaccactttttcttgcagagtaccaatctctttcacattaaacttgttgagcagtgtg |
17522813 |
T |
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| Q |
101 |
atgctagatatggttgacatgggctgaatcaccaaatcatccataaccatgaaagttatgacatctttcacaaacccacccttaatattggaaattttgt |
200 |
Q |
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| T |
17522812 |
atgctagatatagttgacatgggctgaatgaccaaatcatccataaccatgaaagttatgacatctttcacaaacccacccttaatattggaaactttat |
17522713 |
T |
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| Q |
201 |
tttcagcaaccctatttccgagaacagctacttcat |
236 |
Q |
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| T |
17522712 |
tttcagcaaccctatttccgacaacagctacttcat |
17522677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 174
Target Start/End: Original strand, 17016382 - 17016515
Alignment:
| Q |
41 |
tcaaccaccgtttcttgcaaggtaccgatctctttcacattgaacttgttgagcagtgtgatgctagatatggttgacatgggctgaatcaccaaatcat |
140 |
Q |
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| T |
17016382 |
tcaactaccatttcttgtaaggtacccatctctttgatgttgaacttgttaagtatggtaatgcctgataaggtcggcatgggctgaattgacaaatcat |
17016481 |
T |
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| Q |
141 |
ccataaccatgaaagttatgacatctttcacaaa |
174 |
Q |
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| T |
17016482 |
ccatgaccatgaaagtcacaacatctttcacaaa |
17016515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 174
Target Start/End: Original strand, 17546819 - 17546952
Alignment:
| Q |
41 |
tcaaccaccgtttcttgcaaggtaccgatctctttcacattgaacttgttgagcagtgtgatgctagatatggttgacatgggctgaatcaccaaatcat |
140 |
Q |
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| T |
17546819 |
tcaactaccatttcttgtaaggtacccatctctttgatgttgaacttgttaagtatggtaatgcctgataaggtcggcatgggctgaattgacaaatcat |
17546918 |
T |
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| Q |
141 |
ccataaccatgaaagttatgacatctttcacaaa |
174 |
Q |
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| T |
17546919 |
ccatgaccatgaaagtcacaacatctttcacaaa |
17546952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0150 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0150
Description:
Target: scaffold0150; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 187
Target Start/End: Original strand, 8529 - 8693
Alignment:
| Q |
23 |
acctcatccatccccatctcaaccaccgtttcttgcaaggtaccgatctctttcacattgaacttgttgagcagtgtgatgctagatatggttgacatgg |
122 |
Q |
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| T |
8529 |
acctcatccattcccatctcaacaaccttttcctgcaaggtaccaacctccttgatattgaatttgttcagcaaagtaatgcttgatatggttgacattg |
8628 |
T |
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| Q |
123 |
gctgaatcaccaaatcatccataaccatgaaagttatgacatctttcacaaacccacccttaata |
187 |
Q |
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| T |
8629 |
gctgaaccactaaatcgtccattaccataaatgtcacaacatctttcacaaaaccattcttaata |
8693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 115 - 211
Target Start/End: Original strand, 52145250 - 52145346
Alignment:
| Q |
115 |
tgacatgggctgaatcaccaaatcatccataaccatgaaagttatgacatctttcacaaacccacccttaatattggaaattttgttttcagcaacc |
211 |
Q |
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| T |
52145250 |
tgacatgggctgaatcactaaatcatccatcaccataaaaattataatatctttcacaaacccactcttaatattggaaactctctttttagcaacc |
52145346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 174
Target Start/End: Original strand, 52133319 - 52133470
Alignment:
| Q |
23 |
acctcatccatccccatctcaaccaccgtttcttgcaaggtaccgatctctttcacattgaacttgttgagcagtgtgatgctagatatggttgacatgg |
122 |
Q |
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| T |
52133319 |
acctcatccattcccatctcaacaaccttttcctgcaacgcaccaacctccttgatattgaatttgttcagcaaagtaatgcttgatattgttgacattg |
52133418 |
T |
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| Q |
123 |
gctgaatcaccaaatcatccataaccatgaaagttatgacatctttcacaaa |
174 |
Q |
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| T |
52133419 |
gctgaacgactaaatcatccatcaccataaatgtcacaacatctttcacaaa |
52133470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 90
Target Start/End: Original strand, 52145174 - 52145241
Alignment:
| Q |
23 |
acctcatccatccccatctcaaccaccgtttcttgcaaggtaccgatctctttcacattgaacttgtt |
90 |
Q |
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| T |
52145174 |
acctcatctattcccatctcaacaaccttttcttgcaaggtttcaatctctttcactttgaatttgtt |
52145241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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