View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16679_low_14 (Length: 227)
Name: NF16679_low_14
Description: NF16679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16679_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 175; Significance: 2e-94; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 14 - 213
Target Start/End: Complemental strand, 449259 - 449052
Alignment:
| Q |
14 |
tgaactagagatttaatcttccatgcattcaagtttggctcaaagaatagtgccactattgatgattgtaatgttgacattatacacatccaggctgaca |
113 |
Q |
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| T |
449259 |
tgaactagagatttaatcttccatgcattcaagtttggctcaaagaatagtgccactattgatgattgtaatgttgacattatacacatccaggctgaca |
449160 |
T |
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| Q |
114 |
atgataaataattaggatggcttgcgtaagatggaacctgaggaagatataagagatattgttatatataga--------atagctaccttgctttgatc |
205 |
Q |
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| T |
449159 |
atgataaataattaggatggcttgcgtaagatggaacctgaggaagatataagagatattgttatatatagaaatagaatatagctagcttgctttgatc |
449060 |
T |
|
| Q |
206 |
acatatat |
213 |
Q |
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|||||||| |
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| T |
449059 |
acatatat |
449052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 14 - 158
Target Start/End: Complemental strand, 457530 - 457386
Alignment:
| Q |
14 |
tgaactagagatttaatcttccatgcattcaagtttggctcaaagaatagtgccactattgatgattgtaatgttgacattatacacatccaggctgaca |
113 |
Q |
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| T |
457530 |
tgaagtagagaattaattttccatgcattcaggtctggctccaagaataacgtcagtattgatgattgtaatgttgaaattaaacacatccaagctgaca |
457431 |
T |
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| Q |
114 |
atgataaataattaggatggcttgcgtaagatggaacctgaggaa |
158 |
Q |
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| T |
457430 |
atgatatataattaggatggcttgcgtaagctggaacctggggaa |
457386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 160
Target Start/End: Complemental strand, 475199 - 475053
Alignment:
| Q |
14 |
tgaactagagatttaatcttccatgcattcaagtttggctcaaagaatagtgccactattgatgattgtaatgttgacattatacacatccaggctgaca |
113 |
Q |
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| T |
475199 |
tgaagtagagaattaattttccatgcattaaggtctggctctaagaatagtgtgactaatgctgattgtaatgttgccatgaaacacatccatgctgaaa |
475100 |
T |
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| Q |
114 |
atgataaataattaggatggcttgcgtaagatggaacctgaggaaga |
160 |
Q |
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| T |
475099 |
gtgataaataattgggatgacttgcataagctggaacctgaagaaga |
475053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 153
Target Start/End: Complemental strand, 468649 - 468516
Alignment:
| Q |
20 |
agagatttaatcttccatgcattcaagtttggctcaaagaatagtgccactattgatgattgtaatgttgacattatacacatccaggctgacaatgata |
119 |
Q |
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| T |
468649 |
agagacttaatcttccatccattaaagtctggctctaagaatagtgtgactaatgctgattgtaatgttgccatgaaacacatccatgcacaaagtgata |
468550 |
T |
|
| Q |
120 |
aataattaggatggcttgcgtaagatggaacctg |
153 |
Q |
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| T |
468549 |
agtaattgggatgacttgcataagctggaacctg |
468516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 76 - 165
Target Start/End: Complemental strand, 480600 - 480511
Alignment:
| Q |
76 |
tgattgtaatgttgacattatacacatccaggctgacaatgataaataattaggatggcttgcgtaagatggaacctgaggaagatataa |
165 |
Q |
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|||||| ||||| ||||||| ||||||||| |||| ||||| || ||||||||||||||||| |||| |||||||||| |||| ||||| |
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| T |
480600 |
tgattgaaatgtagacattaaacacatccatgctgtaaatgacaagtaattaggatggcttgcataagctggaacctgatgaaggtataa |
480511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 58 - 161
Target Start/End: Original strand, 27490116 - 27490219
Alignment:
| Q |
58 |
gaatagtgccactattgatgattgtaatgttgacattatacacatccaggctgacaatgataaataattaggatggcttgcgtaagatggaacctgagga |
157 |
Q |
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|||||||| ||||| ||||||||||||||||| ||||| ||||||||||||||| | ||||| ||| ||||||||||| || | ||||||||||| | |
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| T |
27490116 |
gaatagtgtcactagtgatgattgtaatgttgccattaaacacatccaggctgaaagagataaggtatttggatggcttgcatatgctggaacctgagta |
27490215 |
T |
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| Q |
158 |
agat |
161 |
Q |
| |
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|||| |
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| T |
27490216 |
agat |
27490219 |
T |
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