View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16679_low_2 (Length: 500)
Name: NF16679_low_2
Description: NF16679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16679_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 129; Significance: 1e-66; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 341 - 485
Target Start/End: Original strand, 5828268 - 5828412
Alignment:
| Q |
341 |
aataaggagataatcaaccaaacagacaaatcaacagagtgagaatcaataatcaatcaaacataagaagaagcaaccaaagagagaaatcaaaccaaat |
440 |
Q |
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| T |
5828268 |
aataaagagataatcaaccaaacagacaaatcaacagagtgagaatcaataataaatcaaacacaagaagaagcaaccaaagagagaaatcaaaccaaat |
5828367 |
T |
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| Q |
441 |
caaacaatcaaccatagaaattgcattgtcaaagtggttatttat |
485 |
Q |
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| T |
5828368 |
caaacaatcaaccatagaaattgcagtgtcaaagtggttatttat |
5828412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 13 - 132
Target Start/End: Original strand, 5827856 - 5827975
Alignment:
| Q |
13 |
aatatcaaaaccataacataagaaaactagagttgcaataaaatatatagcaaaacctaaacatactctacaatattagaaatataggcccaataactta |
112 |
Q |
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| T |
5827856 |
aatatcaaaaccataacataagaaaactagagttgcaataaaatatatagcaaaacctaaacatactctacaatattagaaatataggcccaataactta |
5827955 |
T |
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| Q |
113 |
ttatcttcatatttcccctg |
132 |
Q |
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| T |
5827956 |
ttatcttcatatttcccctg |
5827975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 5828109 - 5828171
Alignment:
| Q |
185 |
agagagagagttaaatagaagaaatcaataaggataagatcaatcaaacataagaaccaatat |
247 |
Q |
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| T |
5828109 |
agagagtgagttaaatagaagaaatcaataaggataagatcaatcaaacataagaaccaatat |
5828171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 439
Target Start/End: Original strand, 6901177 - 6901210
Alignment:
| Q |
406 |
agaagaagcaaccaaagagagaaatcaaaccaaa |
439 |
Q |
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| T |
6901177 |
agaagaagcaaccaaagagtgaaatcaaaccaaa |
6901210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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