View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16679_low_4 (Length: 483)
Name: NF16679_low_4
Description: NF16679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16679_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 5 - 467
Target Start/End: Original strand, 42164487 - 42164951
Alignment:
| Q |
5 |
ttttattaaataactaagtgagatatcaaatattaatattaacttaaataatcaagtgagatatcaaacaatgtagaattgtatactcataaacttctag |
104 |
Q |
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| T |
42164487 |
ttttattaaataactaagtgagatatcaaatattaatattaacttaaataatcaagtgagatatcaaacaatgtagaattgtatactcataaacttctag |
42164586 |
T |
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| Q |
105 |
aataattgagagaatatttatcgagtttacttttaagaggccgaaaaagaaatatattaaacacaacaatcaaagtataagaagtgttcaaattgaattg |
204 |
Q |
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| T |
42164587 |
aataattgagagattatttatcgagtttacttttaagaggccgaaaaagaaatatattaaacacaacaatcaaagtataagaagtgttcaaattgaattg |
42164686 |
T |
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| Q |
205 |
tacacaagtcnnnnnnncaaaagcacctaaacataacggaagccaacaaaaatcaatttataagaggagtcacacctaaacatataagcggtttagtact |
304 |
Q |
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| T |
42164687 |
tacacaagtcaaaaaaacaaaagcgcctaaacataacggaagccaacaaaaatcaatttctaagaggagtcacacctaaacatataagcggtgtagtatt |
42164786 |
T |
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| Q |
305 |
ccattgatat-aattgtagaataaacccttatctttagttttaatccaagagcaaactaagcatatataagcggtccagtactccattgatataaatttt |
403 |
Q |
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| T |
42164787 |
ccattgatataaattgtagaataaacccttatctttagttttaatccaagagcaaactaagcatatataaacggtcaagtactccattgatataaatttt |
42164886 |
T |
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| Q |
404 |
aggat-aagtcttatctttagatttaatccaagatcaaaccaaaagctatgtaaattgtaggatg |
467 |
Q |
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| T |
42164887 |
aggataaactcttatctttagatttaatccaagatcaaaccaaaagctatgtaaattgtaggatg |
42164951 |
T |
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