View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16679_low_6 (Length: 389)
Name: NF16679_low_6
Description: NF16679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16679_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 48 - 373
Target Start/End: Original strand, 10130792 - 10131116
Alignment:
| Q |
48 |
caaatcaatgaactctaacatcatattaaaatccttccataaaaccacacaattttgaaaatccatgtctgatatgttaccataagtttatagccaaact |
147 |
Q |
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| T |
10130792 |
caaatcaatgaaatctaacatcatattaaaatccttcc-taaaaccacacaattttgaaaatccatgtctgatatgttaccataagtttatagccaaact |
10130890 |
T |
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| Q |
148 |
ctgaagaaactaatatttacatacaaaatgtcctataaactaaaaaagttcaagttcttctacatataatatacagcgtcaacataaacatctaatagac |
247 |
Q |
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| T |
10130891 |
ctgaagaaactaatatttacatacaaaatgtcctataaactaaaaaagttcaagttcttctacatataatatacagcgtcaacataaacatttaatagac |
10130990 |
T |
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| Q |
248 |
gtaaattatttctcatccctctaatccatccaaggcactaccttgaagtgtctttatacatcaaaacctttctggttcaatgagctgagtgaggaaaagc |
347 |
Q |
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| T |
10130991 |
gtaaattatttctcatccctctaatccatccaaggcactaccttgaagtgtctttatacatcaaaacctttctggttcaatgagctgagtgaggaaaagc |
10131090 |
T |
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| Q |
348 |
gtttatagctcggtgtggccggacac |
373 |
Q |
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| T |
10131091 |
gtttatagctcggtgtggccggacac |
10131116 |
T |
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