View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16679_low_7 (Length: 327)
Name: NF16679_low_7
Description: NF16679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16679_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 11 - 311
Target Start/End: Complemental strand, 27262388 - 27262088
Alignment:
| Q |
11 |
cataggtagacacgtaagtatgaatgatagtagaaataaacagacatcataatggtatcaactagcactcggtcttattctttgcattatttgttcagca |
110 |
Q |
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| T |
27262388 |
cataagtagacacgtaagtatgaatgatagtagaaataaacagacatcataatggtatcaactagcactcggtcttattctttgcattatttgttcagca |
27262289 |
T |
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| Q |
111 |
tagtacaaattgaaaattcatcatctaacaaaaaatgtagttacatagagtaattctagatataccttgtcaactttaataccaggaacaatgttttact |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
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| T |
27262288 |
tagtacaaattgaaaattcatcatctaacaaaaaatgtagttacatagagtaattccagatataccttgtcaactttaatatcaggaacaatgttttact |
27262189 |
T |
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| Q |
211 |
caataagtacatcgacaatcttccttccatctgttgtggattggtagagagtctcctcaaagagaatggcaccagagatgtactctccaagagatggaac |
310 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27262188 |
caataagtacatccacaatcttccttccatctgttgtggattggtagagagtctcctcaaagagaatggcaccagagatgtactctccaagagatggaac |
27262089 |
T |
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| Q |
311 |
t |
311 |
Q |
| |
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| |
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| T |
27262088 |
t |
27262088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 173 - 311
Target Start/End: Complemental strand, 21194624 - 21194486
Alignment:
| Q |
173 |
taccttgtcaactttaataccaggaacaatgttttactcaataagtacatcgacaatcttccttccatctgttgtggattggtagagagtctcctcaaag |
272 |
Q |
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||||||||||||||| || |||||||||||||||| ||| ||||| || || ||||||||||||||||| ||| |||||||||||||| |||||||| |
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| T |
21194624 |
taccttgtcaactttgattccaggaacaatgttttgctcgataagcacgtcaacaatcttccttccatcaactgtagattggtagagagtttcctcaaat |
21194525 |
T |
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| Q |
273 |
agaatggcaccagagatgtactctccaagagatggaact |
311 |
Q |
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| T |
21194524 |
agaatggcaccagagatatagtctccaagagatggaact |
21194486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 173 - 311
Target Start/End: Complemental strand, 27250397 - 27250259
Alignment:
| Q |
173 |
taccttgtcaactttaataccaggaacaatgttttactcaataagtacatcgacaatcttccttccatctgttgtggattggtagagagtctcctcaaag |
272 |
Q |
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||||||||||||||| || |||||||||||||||| ||| ||||| || || ||||||||||||||||| ||| |||||||||||||| |||||||| |
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| T |
27250397 |
taccttgtcaactttgattccaggaacaatgttttgctcgataagcacgtcaacaatcttccttccatcaactgtagattggtagagagtttcctcaaaa |
27250298 |
T |
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| Q |
273 |
agaatggcaccagagatgtactctccaagagatggaact |
311 |
Q |
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||||||||||||||||| || |||||||||||||||||| |
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| T |
27250297 |
agaatggcaccagagatatagtctccaagagatggaact |
27250259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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