View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16679_low_9 (Length: 280)
Name: NF16679_low_9
Description: NF16679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16679_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 28635494 - 28635219
Alignment:
| Q |
1 |
tcatcccaaaacttctcactgatttctgctccgatagcacaccacgcaccgtggttaaaagcagggatgcatcacatgactgcatacatatgcatcatta |
100 |
Q |
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| T |
28635494 |
tcatcccaaaacttctcaccgatgtctgctccgataccacaccatgcaccgttgctaaaagcagggatgcatcacatgactgcatacatatacatcatta |
28635395 |
T |
|
| Q |
101 |
ttagttgccgattaattt-aaacgatataactttgttgtgttaattatgtaatctatgtatatttatactcacattaactacgcaatcatggaagagatt |
199 |
Q |
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| T |
28635394 |
ttagttgccgattaatttgaaacgatataactttgttgtgttaattatgttatctatatatatttatactcacgttgactgtgcaatcatggaagagatt |
28635295 |
T |
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| Q |
200 |
tcgaacccatgatatggccgtgtttccgtgctccttatatagttcagtgacttgttgtttaattatctctgctgct |
275 |
Q |
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||||||||| || ||||| |||||||| |||| |||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
28635294 |
tcgaacccaggaaatggctgtgtttccatgctggttatatagttcagtgacttgttgtttgattatctcttctgct |
28635219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 158 - 275
Target Start/End: Complemental strand, 28604958 - 28604841
Alignment:
| Q |
158 |
tatatttatactcacattaactacgcaatcatggaagagatttcgaacccatgatatggccgtgtttccgtgctccttatatagttcagtgacttgttgt |
257 |
Q |
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||||||||||||||| || |||| |||||||||||||||||||| |||||| || || || |||||||| |||| ||||| | |||| |||||||||| |
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| T |
28604958 |
tatatttatactcaccttgactatgcaatcatggaagagatttctaacccacgaaattgctgtgtttccatgcttgttatacaattcattgacttgttgc |
28604859 |
T |
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| Q |
258 |
ttaattatctctgctgct |
275 |
Q |
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| T |
28604858 |
ttgatgatctcttctgct |
28604841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 158 - 275
Target Start/End: Complemental strand, 28663026 - 28662909
Alignment:
| Q |
158 |
tatatttatactcacattaactacgcaatcatggaagagatttcgaacccatgatatggccgtgtttccgtgctccttatatagttcagtgacttgttgt |
257 |
Q |
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||||||||||||||| | |||| |||||||||||||||||||| |||||| || | || |||||||| ||||| ||||| |||||| |||||| ||| |
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| T |
28663026 |
tatatttatactcacctcgactatgcaatcatggaagagatttctaacccacgaaaccgctgtgtttccatgctcgttatacagttcaatgactttttgc |
28662927 |
T |
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| Q |
258 |
ttaattatctctgctgct |
275 |
Q |
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|| || |||||| ||||| |
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| T |
28662926 |
ttgatgatctcttctgct |
28662909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 28654775 - 28654685
Alignment:
| Q |
1 |
tcatcccaaaacttctcactgatttctgctccgatagcacaccacgcaccgtggttaaaagcagggatgcatcacatgactgcatacatat |
91 |
Q |
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|||||||||||||||| || ||| |||||||||||| |||||| ||| ||| | |||||| | ||||||||| |||||||||||| |||| |
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| T |
28654775 |
tcatcccaaaacttcttaccgatgtctgctccgataccacaccgcgccacgttgctaaaagaaaggatgcatcgcatgactgcatatatat |
28654685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 167 - 269
Target Start/End: Complemental strand, 28654620 - 28654521
Alignment:
| Q |
167 |
actcacattaactacgcaatcatggaagagatttcgaacccatgatatggccgtgtttccgtgctccttatatagttcagtgacttgttgtttaattatc |
266 |
Q |
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| T |
28654620 |
actcacattgaccatgcaatcatggaagagatttcgaagccacgaaatggctgtgcttccttg---attatatagttcagtgacttgctgcttgattatc |
28654524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 28605326 - 28605243
Alignment:
| Q |
1 |
tcatcccaaaacttctcactgatttctgctccgatagcacaccacgcaccgtggttaaaagcagggatgcatcacatgactgca |
84 |
Q |
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||||||||||||||||| | | | |||||||||||| ||| || ||||||| |||||||||||||||||||||||||||| |
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| T |
28605326 |
tcatcccaaaacttctctccgctgtctgctccgataccacgccgtgcaccgtctccaaaagcagggatgcatcacatgactgca |
28605243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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